Protein Info for AO356_25010 in Pseudomonas fluorescens FW300-N2C3

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 471 transmembrane" amino acids 30 to 48 (19 residues), see Phobius details amino acids 61 to 80 (20 residues), see Phobius details amino acids 95 to 114 (20 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details amino acids 154 to 177 (24 residues), see Phobius details amino acids 188 to 209 (22 residues), see Phobius details amino acids 257 to 278 (22 residues), see Phobius details amino acids 298 to 316 (19 residues), see Phobius details amino acids 323 to 339 (17 residues), see Phobius details amino acids 345 to 366 (22 residues), see Phobius details amino acids 377 to 400 (24 residues), see Phobius details amino acids 413 to 431 (19 residues), see Phobius details PF07690: MFS_1" amino acids 36 to 397 (362 residues), 157.4 bits, see alignment E=2.4e-50

Best Hits

KEGG orthology group: None (inferred from 96% identity to pba:PSEBR_a3184)

Predicted SEED Role

"D-galactarate permease" in subsystem D-galactarate, D-glucarate and D-glycerate catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W850 at UniProt or InterPro

Protein Sequence (471 amino acids)

>AO356_25010 MFS transporter (Pseudomonas fluorescens FW300-N2C3)
MIGRHPLNNVTDSTHDSTLALAAAKVKRHVLPLVVVMFIVNYIDRVNIGFVRSHLETDLG
IGAAAYGLGAGLFFVGYALFEVPSNMLLQRYGARAWLTRIMFTWGAAAMAMAFVQGETSF
YVLRFILGAAEAGFFPGIIYYFTQWLPANERGKAMAIFLSGSAIASVISGPVSGALLHIS
GMGLHGWQWMFLIEGFASIVLCGFVWFWLQSHPSQAKWLTAEEKAVLIAAIAEEQRAREA
AQVIKPSMFKLLADRQIALFCFIYFSIALTIYGATFWLPSMIKKMGGLGDFQVGLLNSIP
WIISIVAMYGFAALAGKWKFQQAWVAVTLVIAAFGMFMSTTGGPIFAFVAICFAAIGFKA
ASALFWPIPQSYLDARVAAAVIALINSIGNLGGFVAPTAFGFLEQTTGSIEGGLYGLAAT
SLVAAVVIFFARTAPKRDTPNSLSGRPETVAEANQLEKSQALKPGPSGAAV