Protein Info for AO356_24435 in Pseudomonas fluorescens FW300-N2C3

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 274 PF02311: AraC_binding" amino acids 27 to 151 (125 residues), 78 bits, see alignment E=8.9e-26 PF00165: HTH_AraC" amino acids 184 to 224 (41 residues), 45.2 bits, see alignment 1.1e-15 amino acids 238 to 273 (36 residues), 27.7 bits, see alignment 3.4e-10 PF12833: HTH_18" amino acids 197 to 273 (77 residues), 86.3 bits, see alignment E=2.2e-28

Best Hits

KEGG orthology group: None (inferred from 92% identity to pba:PSEBR_a3295)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9X3N2 at UniProt or InterPro

Protein Sequence (274 amino acids)

>AO356_24435 AraC family transcriptional regulator (Pseudomonas fluorescens FW300-N2C3)
MKHAPHDATPRFWRDAALPFIEARAIADGRKVCYSRHSHDHFSIGAITAGRSTYIHERSN
FQVQSGTVVLMNPGDVHACNPIDDEPWSYVMLYVDTQWLRDLQRRIGFDETLDFQSFSTT
HSRDVELFAALQGLYEQLVDERLGTDRKRSAAEAFFTDLQQRLNPAGRPDRGSHPGLMRA
AQFIHDHCTEALRLEDICAAAQLSPSYLSRAFKRHYGMTPHAFLVNRRIQFARRQLREGK
LIADVALDSGFADQAHFQRAFKQHLAATPGQYRG