Protein Info for AO356_23960 in Pseudomonas fluorescens FW300-N2C3

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 transmembrane" amino acids 20 to 46 (27 residues), see Phobius details amino acids 52 to 72 (21 residues), see Phobius details amino acids 84 to 105 (22 residues), see Phobius details amino acids 111 to 130 (20 residues), see Phobius details amino acids 144 to 164 (21 residues), see Phobius details amino acids 170 to 188 (19 residues), see Phobius details amino acids 223 to 244 (22 residues), see Phobius details amino acids 264 to 285 (22 residues), see Phobius details amino acids 294 to 313 (20 residues), see Phobius details amino acids 319 to 340 (22 residues), see Phobius details amino acids 352 to 371 (20 residues), see Phobius details amino acids 380 to 402 (23 residues), see Phobius details PF07690: MFS_1" amino acids 26 to 322 (297 residues), 131.7 bits, see alignment E=4.9e-42 PF00083: Sugar_tr" amino acids 47 to 199 (153 residues), 61.9 bits, see alignment E=8.5e-21 amino acids 269 to 412 (144 residues), 38.8 bits, see alignment E=8.5e-14

Best Hits

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a2546)

Predicted SEED Role

"Transporter, MFS superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9XE35 at UniProt or InterPro

Protein Sequence (429 amino acids)

>AO356_23960 MFS transporter (Pseudomonas fluorescens FW300-N2C3)
MFSWYRQVTARERKTFWACFGGWSLDALEVQMFGLAIPALIAAFALSKGDAGLVSGVTLV
TSAIGGWVGGTLSDRYGRVRTLQWMILWFSFFTFLSAFVTGFHQLLIVKALQGFGIGGEW
AAGAVLMAETINPKYRGKVMGTVQSAWAVGWGLAVGVFTLIYSLVPQDMAWRVMFVVGLL
PSFLIIWVRRNVEEPDSFQRLKKDNVIPQSFFKSLAGIFRPELIRVTLFGGLLGLGAHGG
YHAVMTWLPTFLKTERNLSVLNSGGYLAVIIFAFWCGCVVSGLLIDRIGRRKNIVLFALC
CVVTVQCYVFLPLTNTQMLFLGFPLGFFAAGIPASLGAFFNELYPADVRGAGVGFCYNFG
RVLSAMFPFLVGHMSDSMSLGSAIGIDAGIAYGVAVIAALCLPETRGRSLEATAASAPVV
EHDSQSARA