Protein Info for AO356_23535 in Pseudomonas fluorescens FW300-N2C3

Annotation: MarR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 PF12802: MarR_2" amino acids 17 to 74 (58 residues), 43.1 bits, see alignment E=1.3e-14 PF01047: MarR" amino acids 20 to 74 (55 residues), 36.4 bits, see alignment E=1.4e-12 PF09339: HTH_IclR" amino acids 31 to 63 (33 residues), 23.4 bits, see alignment 1.5e-08 PF13463: HTH_27" amino acids 33 to 83 (51 residues), 30.5 bits, see alignment 1.2e-10 PF00583: Acetyltransf_1" amino acids 179 to 273 (95 residues), 54.4 bits, see alignment E=5.2e-18 PF13673: Acetyltransf_10" amino acids 180 to 280 (101 residues), 44.3 bits, see alignment E=6e-15 PF13508: Acetyltransf_7" amino acids 190 to 274 (85 residues), 46.2 bits, see alignment E=1.8e-15

Best Hits

KEGG orthology group: None (inferred from 88% identity to pba:PSEBR_a2458)

Predicted SEED Role

"Transcriptional regulator, MarR family / Acetyltransferase (GNAT)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9XDT4 at UniProt or InterPro

Protein Sequence (303 amino acids)

>AO356_23535 MarR family transcriptional regulator (Pseudomonas fluorescens FW300-N2C3)
MVRELGFMHTTLAATDYPPSSVHTIVELGNRQSLTAGELVELLGLEKSSVSRMVRKLIEA
GEIEEVAHEQDARAKRLRLTAQGQNTLCAIDAFATQQVVAAMAHLSDGQCQTVSEGIASY
AIALHAHRLGTAPPAPAQLEIARGYRPGVIGRIVQMHADYYARHSNFGQLFESLVASDMA
ELMGRLHNPRNEVWVALDGERIVGSIAIDGEGEGGSAVLRCFILDDSARGKGAGRRLLAE
AMKFCDEWGFSSTILWTFQGLDAARKLYEAFGFRLEQEQEGQQWGRPVTEQCFVRPGPTV
API