Protein Info for AO356_23470 in Pseudomonas fluorescens FW300-N2C3

Annotation: polyketide synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1136 PF00109: ketoacyl-synt" amino acids 15 to 246 (232 residues), 94 bits, see alignment E=1.8e-30 PF02801: Ketoacyl-synt_C" amino acids 256 to 369 (114 residues), 106.2 bits, see alignment E=1.7e-34 PF03756: AfsA" amino acids 862 to 948 (87 residues), 38.4 bits, see alignment 1.8e-13 amino acids 999 to 1127 (129 residues), 33.3 bits, see alignment E=6.7e-12

Best Hits

KEGG orthology group: None (inferred from 91% identity to pba:PSEBR_a2451)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9X208 at UniProt or InterPro

Protein Sequence (1136 amino acids)

>AO356_23470 polyketide synthase (Pseudomonas fluorescens FW300-N2C3)
MSGAVTTAGDFCFSAMAGEFPGAPSTEALWQLLAKGQVAPMESMPTRWEVDKASIYSTKA
GEKDRTYLDSAFCLTDDASIPSRHEGRQVAIGKKVLQTLLTQLTAQGSPLGGERTALVVA
TSWSDESYFVTGMSGKTAAPPGFTPGEQVAALAAAFALAGPALSVDTACSSFPYALDMAQ
ALVNSGQADNAIVMALNTVLPPALFLGFSQLTAFSARARMEAFGQDADGIVPGECAVAFL
VEPVAQALTAQRHPLGVLRALGMSADGAEGSVFAPGKQAQYSAYQRAYRGLDPRDVDYIE
THGTGTPLGDATELASLNNFFAPHRPDDRKITIGSIKSVIGHPLAAAGGASLAKALMILR
HKGIPPQPGYRPSTKVDDTCLRLATQQVQPLQARPSALRIGISSFGFGGANAHLVVDEYL
PGDHPATDPATTSGVLMLDLAIVEAEAALGSHRSLQAFQQQLDQPAAPSVVFPYGRFVDY
TPAPGQPLLGKFLAQDHVIDIDGFGMGPKPLAHVDPFKLLITDRVNHLLRRLPGVAGSPG
TAMVMCCNMGGERFSNAYSSAHNFYSRAQGAAPGVEVTDVATMLPNMLSGYPAQIFDFKG
FHQTLVGTAGLFWQTLLASPQWFDNGITTLLLGAGRFFSGEIEVERARCNATQQGEGLGL
IALRRYKPQATDNPLLVIRAAVLAHAAGSLEEACRLLGKAPGHSLHVEVCELQPVATPAS
GSLQDITGFLAEASGIETLLAVMLRGAPHTVIEVREAGKAVMWLFTEQLRQWNPTTAEVS
SPIKHPFMLRFAHSSSQELQQVITPVSLVREPQNDGVDVQQLSDMLTSTLLSGLRVRVRA
MESLFALHRGDTAQRPTHWQRSAEHSVITNAQRSPQSLYAQLVVNEAHPYFFDHPLDHIP
GILLLEGVLQLLELAMPPLSGRVAYIKTLRIRFQHYVQKQDTVDLHVEQGEDPLVFNAKV
MQAGKVMCTCVLVMAYSSAFETSPAGEFSATPCRDKALLHKARAENVIVSDMSGIAQGLS
VDTVKLPPEHFFQAGDPQHYSMVYFLEVARQCYMQIAHSHLRIPLNTPMNLLALSFTLDR
PIPRNSPLSLAPQAGFDASLQAFKTNRIYIDLFNRGEKIGQASITAQVLSQSAPAA