Protein Info for AO356_23310 in Pseudomonas fluorescens FW300-N2C3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1132 PF03538: VRP1" amino acids 3 to 459 (457 residues), 155.3 bits, see alignment E=1.5e-49

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WW26 at UniProt or InterPro

Protein Sequence (1132 amino acids)

>AO356_23310 hypothetical protein (Pseudomonas fluorescens FW300-N2C3)
MERLDIQSVFDIVRQPKGLFCQRLAKFSDADGELAYDNALCYAVQIARLYREKQVTSDSA
RPASKRTGVRALVDIGPSYPNLFKERWDEFCKVGALAAVDSPVAYLSALYRLATTSLEEE
NTGDASKKIRLDVRRPDIKTLLIDQQATFKPLPMLDIANTVLSQGIERYLSGTPSAGTPL
HRLFAAKYYPFSFPYTHAHHQCQLGLSQKKLMLGEINYLISPQLPVTGGNNYGRGQQHPT
VAQQLFAGLSVEQYGVLTRSTPFSTYYISHSQLVQGWQGPSISNLNLFEARSTSYLLPQQ
EVIKRAEPEAHEIATSGGAMSTQVTLAFSKSGEADKDTVLSFGVRRIRENTNYAINRYSP
VKAQPACTYIQYLPADNAGASLQVSPGYQVTFDMLVATLGADNSTQLLEKQRFTLALDEA
YVLTGPEQEFFRTYYGMEVMTLNTASLSNLNTFMARTGLNADQVEALLSQRSQRPRLSAN
CPSLNPLVNGVQFNLPYPHASHYGACYVNGVGSDRFDASAENPDFDRFDNSMGLKETFED
GRSEWSITKTSLNRFDRLQRMIRLQRWMNIPFAELDTLVVSAIRGCGENNLDMALNGDVM
RVLGLFRYFSSHYQITAEEFAAFFHHLPPYATGDRTPLFDQVFNSPSLFDTPFVLDQQAF
DLTSADPADQKTAYQLCAGLGVQLTEGSLLQLANITIAHVGPLTRSLETVSSLYRQARIA
RMLDLSIEDYCALLDLLGGEAYQKNLATGRFRLGGGAPDIADILMHMDWAVTWLRDTKRK
VGDVRRLLSRDPYEFLPLQTLLERLNRLAAELTPALVSPSELDRLSLPVKDDQNADIAWR
ALLRTRLLNDQGLVTGGYPYPETLEDTTVQMIDRTLAQVLQPLHLSNDVKTSIQAKLGEC
LVNGYARQLQLLEGLLQDTLGLPMALAESVVQWSNNTTHGLLSEVLAMPTQGQNTALTER
FQPLLCHAAVARHLGISERALRTFLREPAWLGLANNASNLTLASLYYLERYGLLLDTLGK
SEAEWLAYLALANSPDKARKAKDRAATINDSANTALAQLLGWQPGEVKTLCDTLPDGRAT
QWLQMEWVYRCQQVCQTTGLGAASVLLCAGVSAYSNSTSWLPLGEAMMAASR