Protein Info for AO356_23300 in Pseudomonas fluorescens FW300-N2C3

Annotation: toxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 666 TIGR03696: RHS repeat-associated core domain" amino acids 585 to 665 (81 residues), 80.4 bits, see alignment E=1.1e-26

Best Hits

Predicted SEED Role

"Putative insecticidal toxin complex" in subsystem cAMP signaling in bacteria

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (666 amino acids)

>AO356_23300 toxin (Pseudomonas fluorescens FW300-N2C3)
MTVLTQGIHTHTPTLTVADPRGLDVRSVTYYRAVETTAPEERINRSAYDAMGRLVKQWDP
RLWALKTEDAATPANLNNRYSLSGKVLGSVSVDAGERISLFGDADQLVETWDSRETERRV
EYDDLLRPLAIYEQGKGEAARCTERYEYANGDTSFAAHNQCGQVIRHDDPAGTQTLDEYA
LTGGILEQTQRFLSSLEIPDWPPGPADREALLEPVAQAATSSSRFNPLGDVLEQIDAKGN
RQLFDYTVDGLLFASHLQLSGQATPRTLVGDIAYNAYSQVEQETAGNGVVSTLTYRAEDG
RLLRLHAARDADAPLQDLRYVYDPVGNVLSIEDAALPIRYFANQRVEPINRYDYDSLYQL
TKATGWEAGSASRGPGFNRFDEPGAVANYQQTYHYDAGGNLLELIHAGPQSHSRKLTAAR
YSNRCLPDLDDRPPTEEEIVAAFDGNGNLLELQPGQVMSWDLRNQLHEVRPVERDSGDDD
RERYFYGGDGMRRRKVRSTQTNARSLISEVRYLPGLEIRTRQGTGEVLQVICVQAGRSAM
QVLHWETTPPAGMNNDQYRYSLTDHLGSSSLELDGEAGVISRETYHPYGSTAWFAGRSEV
EASYKTVRYSGKERDATGLYYYGFRYYATWLQRWVNPDPAGDVDGLNRFLMVSNNPILYL
DRLGLQ