Protein Info for AO356_22830 in Pseudomonas fluorescens FW300-N2C3

Annotation: diguanylate phosphodiesterase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 514 transmembrane" amino acids 15 to 35 (21 residues), see Phobius details amino acids 236 to 254 (19 residues), see Phobius details PF12792: CSS-motif" amino acids 42 to 230 (189 residues), 127 bits, see alignment E=7.2e-41 PF00563: EAL" amino acids 263 to 498 (236 residues), 220 bits, see alignment E=3.1e-69

Best Hits

KEGG orthology group: None (inferred from 93% identity to pba:PSEBR_a3409)

Predicted SEED Role

"Rtn protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WZP3 at UniProt or InterPro

Protein Sequence (514 amino acids)

>AO356_22830 diguanylate phosphodiesterase (Pseudomonas fluorescens FW300-N2C3)
MPLTATRSHTRPRRYLITLLCGLVPILSGLVILYMQAERTLAQHTRQTAEESVRQIELML
DNTALAARELLPLAGQPCEAVKLALREQVTRRPFVRSTNLIWDNNLYCSSLFGAFEERVN
PSDYHQGTLWLLDGNPVTPDTALLIYRLNEGRQGALATLDGYHLANVLRLIGRQTRLRLQ
VGPNWLAADGKVQPAPLPGSAVAQTELSSARYAFNVEAGFDEGETWRYMAREYPPLFSLL
IFFGVVAGTLGHWLQQRASSPSRELQRALEAGEFVPYLQPVVHSDSKRWAGVEVLMRWNH
PKEGLVRPDLFIPFAEHSGVIVPMTRALMQQTMHLLAPLAPRLEAPFHVGINITARHCQD
LALVDDCREFLNAFAPGAMTLVLELTERELIEPTPVTRQLFDQLRDLGVKIALDDFGTGH
SSLAYLRQFNVDFLKIDQSFVAMIGADALSRHLLDSIIELSGKLDLDMVAEGVETVEQSD
YLSAHGVNFLQGYLFGRPMSGQAFVETLTGTNGS