Protein Info for AO356_22630 in Pseudomonas fluorescens FW300-N2C3

Annotation: sulfonate ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 573 transmembrane" amino acids 15 to 36 (22 residues), see Phobius details amino acids 67 to 88 (22 residues), see Phobius details amino acids 99 to 123 (25 residues), see Phobius details amino acids 133 to 152 (20 residues), see Phobius details amino acids 182 to 196 (15 residues), see Phobius details amino acids 199 to 228 (30 residues), see Phobius details amino acids 237 to 257 (21 residues), see Phobius details amino acids 291 to 308 (18 residues), see Phobius details amino acids 329 to 352 (24 residues), see Phobius details amino acids 372 to 395 (24 residues), see Phobius details amino acids 407 to 429 (23 residues), see Phobius details amino acids 437 to 461 (25 residues), see Phobius details amino acids 482 to 503 (22 residues), see Phobius details amino acids 540 to 559 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 81 to 256 (176 residues), 50.9 bits, see alignment E=8.5e-18 amino acids 387 to 555 (169 residues), 56.7 bits, see alignment E=1.4e-19

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 94% identity to pba:PSEBR_a3448)

Predicted SEED Role

"ABC-type anion transport system, duplicated permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WQR3 at UniProt or InterPro

Protein Sequence (573 amino acids)

>AO356_22630 sulfonate ABC transporter permease (Pseudomonas fluorescens FW300-N2C3)
LTPFKNREQLPAHSWRADIASLGLLVLLAAFVFHGLDQMNQPLGVLDASPLSLDLVHLPE
YALRTTLRMFIALFVSLVFSLVIATLAAKSRKAAMVILPALDILQSVPVLGFLTFTVVFF
MGLFPGKETGVECAAIFAIFTSQVWNMTFSFYQSLRTVPNDLYDVSRQFSFSPWQRFVRL
ELPFATPGLVWNMMMSMSGGWFFVVASEAITVGDTTVSLPGIGSWLALAIEQQNITAIAW
AVLAMVGVIIAYDLLFFRPIVAWADKFRFEQTASQKRPRSRVYDLLRSTRLVPLVLLALG
SLKASLFLEKIPRLPSLRFKTSARVSRAADLAWLVLVAAACIAGILHLSRFIGSTLGWDD
VASTFGLGLATLLRVSVLIVLASVVWVPIGVWIGLNPRWAERLQPVAQLLAAFPANVLFP
FAVIAIVALKLNPDVWLSPLMILGTQWYILFNVIAGASALPTDLREASRSFHVRGWQWWR
QVALPGVFPYYITGALTAAGGSWNASIVAEAVSWGDQHLYASGLGAFIAQATTAGDLHRV
ALGVVVMSIFVVGFNRLLWRPLYGFAERRLRID