Protein Info for AO356_22620 in Pseudomonas fluorescens FW300-N2C3

Annotation: ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 358 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 37 to 54 (18 residues), see Phobius details amino acids 59 to 77 (19 residues), see Phobius details amino acids 85 to 104 (20 residues), see Phobius details PF00512: HisKA" amino acids 129 to 197 (69 residues), 38.3 bits, see alignment E=1.1e-13 PF02518: HATPase_c" amino acids 241 to 349 (109 residues), 84 bits, see alignment E=1e-27

Best Hits

KEGG orthology group: None (inferred from 93% identity to pba:PSEBR_a3450)

Predicted SEED Role

"Sensor histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W783 at UniProt or InterPro

Protein Sequence (358 amino acids)

>AO356_22620 ATPase (Pseudomonas fluorescens FW300-N2C3)
MRDGHSMRRTQLTLRLLLLLGLALGIAAIDTVTDLEIAVGVFQIVVVLIAVRILPARAVA
GVAILCMVLTILSYRLTRFGDTEAGLINVLISLAAIAGTTYLALRLSAAVRTVHQTRAHL
AHIARINMLGELAASIAHEVNQPLAAVATSGGACLRWMATEPPNLPKARQAVERIIADTH
RASDIIARLRGMARHQAPTKQWLNVADTVHAALRLMTGELNEQNITVQVQVQDGLPPMLA
DEVQIQQVILNLAMNALDAMRQVDVDQRILQFQVTLESPGQLLFSVSDQGNGLPASDRER
VFDAFYSTKQDGMGMGLAISRSIIEAHDGRLWATSHSPSGSTFHFTLPAVTRESDEPD