Protein Info for AO356_22605 in Pseudomonas fluorescens FW300-N2C3

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 307 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 51 to 69 (19 residues), see Phobius details amino acids 80 to 99 (20 residues), see Phobius details amino acids 107 to 128 (22 residues), see Phobius details amino acids 135 to 153 (19 residues), see Phobius details amino acids 164 to 181 (18 residues), see Phobius details amino acids 193 to 214 (22 residues), see Phobius details amino acids 224 to 246 (23 residues), see Phobius details amino acids 257 to 275 (19 residues), see Phobius details amino acids 281 to 301 (21 residues), see Phobius details PF00892: EamA" amino acids 21 to 152 (132 residues), 78.7 bits, see alignment E=2.5e-26 amino acids 166 to 297 (132 residues), 72 bits, see alignment E=2.9e-24

Best Hits

KEGG orthology group: None (inferred from 86% identity to pba:PSEBR_a3454)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WBB8 at UniProt or InterPro

Protein Sequence (307 amino acids)

>AO356_22605 transporter (Pseudomonas fluorescens FW300-N2C3)
METRCVPFDGLKNPGRPRVKVILATLFVILCWAYSPIGIRIGLQAYEPGQLALMRFLIAS
VFMAVVAIAKGISRPRLGDLPLLAVLGFFAVSLHHIALNYGQRGVSAGAASVLAQSTPLF
STLLAHFVFKDRVGAWQWGCVLCGLLGAAVVVTGDRGLGDMDARGLLILLAALSWSVYFA
LQKHHTHRYDGLTLVCYTVWSGTLLLFIFAPGMLSAARQASASVNLAVLVLGIFPSALAY
LAWAYVLAHSNVSRASTALYLIPPTAMLMAGLILAERPAAMVMVGAVIVLASVLALNVGP
ASVARAG