Protein Info for AO356_22060 in Pseudomonas fluorescens FW300-N2C3
Annotation: NADH:ubiquinone oxidoreductase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 98% identical to NUOCD_PSEPF: NADH-quinone oxidoreductase subunit C/D (nuoC) from Pseudomonas fluorescens (strain Pf0-1)
KEGG orthology group: K13378, NADH dehydrogenase I subunit C/D [EC: 1.6.5.3] (inferred from 100% identity to pba:PSEBR_a3583)MetaCyc: 92% identical to NADH-quinone oxidoreductase subunit C/D (Pseudomonas putida KT2440)
NADH-DEHYDROG-A-RXN [EC: 7.1.1.2]
Predicted SEED Role
"NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)" in subsystem Respiratory Complex I (EC 1.6.5.3)
MetaCyc Pathways
- aerobic respiration III (alternative oxidase pathway) (3/3 steps found)
- NADH to cytochrome bo oxidase electron transfer I (2/2 steps found)
- aerobic respiration I (cytochrome c) (3/4 steps found)
- NADH to cytochrome bd oxidase electron transfer I (1/2 steps found)
- Fe(II) oxidation (3/6 steps found)
- NAD(P)/NADPH interconversion (3/6 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 1.6.5.3
Use Curated BLAST to search for 1.6.5.3 or 7.1.1.2
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A0N9X153 at UniProt or InterPro
Protein Sequence (594 amino acids)
>AO356_22060 NADH:ubiquinone oxidoreductase (Pseudomonas fluorescens FW300-N2C3) MTTGSALYIPPYKADDQDVVVELNNRFGPEAFTAQPTRTGMPVLWVARAKLVEVLTFLRN LPKPYVMLYDLHGVDERLRTKRQGLPDGVDFTVFYHLMSIERNSDVMIKVALSESDLSVP TVTGIWPNANWYEREVWDMYGIDFPGHPHLTRIMMPPTWEGHPLRKDFPARATEFDPFSL SLAKQQLEEEAARFKPEDWGMKRSGANEDYMFLNLGPNHPSAHGAFRIILQLDGEEIVDC VPDIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDV IRIMMAEFFRITSHLLFLGTYIQDVGAMTPVFFTFTDRQKAYTVIEAITGFRLHPAWYRI GGVAHDLPRGWEKLVKDFVEWMPKRLDEYTKAALQNSILKGRTIGVAAYNTKEALEWGVT GAGLRSTGCDFDLRKARPYSGYENFEFEVPLAANGDAYDRCMVRVEEMRQSIKIIDQCLR NMPEGPYKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSY YLTSDGGTMSYRTRIRTPSYPHLQQIPSVIKGSMVADLIAYLGSIDFVMADVDR