Protein Info for AO356_21880 in Pseudomonas fluorescens FW300-N2C3

Annotation: fatty acid desaturase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 314 transmembrane" amino acids 26 to 44 (19 residues), see Phobius details amino acids 49 to 68 (20 residues), see Phobius details amino acids 80 to 98 (19 residues), see Phobius details amino acids 148 to 175 (28 residues), see Phobius details amino acids 178 to 197 (20 residues), see Phobius details amino acids 205 to 225 (21 residues), see Phobius details amino acids 245 to 269 (25 residues), see Phobius details PF00487: FA_desaturase" amino acids 55 to 285 (231 residues), 103.4 bits, see alignment E=8.8e-34

Best Hits

KEGG orthology group: None (inferred from 54% identity to pfo:Pfl01_4347)

Predicted SEED Role

"Fatty acid desaturase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9X2B7 at UniProt or InterPro

Protein Sequence (314 amino acids)

>AO356_21880 fatty acid desaturase (Pseudomonas fluorescens FW300-N2C3)
MPNYLDEAHRVEIVKLSRTLTSQTEWPTWLLLVGFYLAWALVVFHGQALGQLISIALLVP
LVVLWMSIQHELIHGHPTRWPAINKALGFLPFAVWYPYDIYRDTHLAHHNDEVLTVPGQD
PESRYVTSAYWLQSPRYVKALLWVNKTLGGRLLMGAPLAVISLLGSEIRGLFLAGGSTGR
VWIAHVLSVVVVLTLVEQYSAISAVQYVFLVSLPALSIAMIRSFYEHRPSTLPEHRTVIN
ESSGLLSWLFLNLNLHLVHHDLPGLPWFYLPRVYRARREQWIARNNGYVIHGYFQLLQRH
LINPVDCPRHPARH