Protein Info for AO356_21790 in Pseudomonas fluorescens FW300-N2C3
Annotation: sulfonate ABC transporter ATP-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 50% identical to Y3647_BRUA2: Putative ATP-binding protein BAB2_1147 (BAB2_1147) from Brucella abortus (strain 2308)
KEGG orthology group: K02049, sulfonate/nitrate/taurine transport system ATP-binding protein (inferred from 92% identity to pfo:Pfl01_3159)Predicted SEED Role
"Various polyols ABC transporter, ATP-binding component" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A0N9W6U7 at UniProt or InterPro
Protein Sequence (282 amino acids)
>AO356_21790 sulfonate ABC transporter ATP-binding protein (Pseudomonas fluorescens FW300-N2C3) MSVMQTPEGRIDIRQLSIVLGEGAQAFEAVQGLDCQIEAGQFVCVLGPSGCGKSTLLGAL AGHLQPRSGSLNVDGLNVSGPSPQRGMVFQQHTLFPWRSVRDNVAFGLKMRGLGKAERHR AADEILALVGLEGFAGHWPDQLSGGMQQRVEIARVLVNRPRLLLMDEPFGALDALTRLNM QELLLDIWTRIRTTVVFVTHDIDEALFLADRLLVMSPRPGRIIEDLRLDFPRPRTTELVT RPEFSRLKRHCLDLLRHEDGRQLPRLNPLGLPPETSLPRFAL