Protein Info for AO356_21605 in Pseudomonas fluorescens FW300-N2C3

Annotation: Fis family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 614 PF00158: Sigma54_activat" amino acids 316 to 479 (164 residues), 222.6 bits, see alignment E=5.2e-70 PF14532: Sigma54_activ_2" amino acids 325 to 484 (160 residues), 63.9 bits, see alignment E=4e-21 PF02954: HTH_8" amino acids 583 to 612 (30 residues), 35.3 bits, see alignment (E = 1.6e-12)

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a3770)

Predicted SEED Role

"sigma-54 dependent transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WAX2 at UniProt or InterPro

Protein Sequence (614 amino acids)

>AO356_21605 Fis family transcriptional regulator (Pseudomonas fluorescens FW300-N2C3)
MAAPAPALSHEAIIQASWSRCRAFGLNHQSVPAFDQLPAQGIAQLLESQHSLVQTTHQEV
LPYYENILSNSNCLIMLADNQGQVLTSWGTQRFIEPKLAHGFSAGASWMERCTGTNAIGT
ALACEQAVHIEHDEHFLKANRFMTGSAAPIFDAERKVIAVLDVSSDSYLPPSHTLGMVKM
MSQTVENRLILNLFRGEHFQLTFNTGLNNLDSQWAGLLIFDESGQVLSANRRADNLLGLS
LSRVSIESLFKVSLLELLNQPDGLPFALQASGSNRFQCLLRRPSQVSIRARVFTEATPAP
APASNAISLNTLHFGDNRVEKAVRQAERLLEKDIPLLIHGETGVGKEVFVKALHQASSRC
KQPFIAVNCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADRGTLFLDEIGDMPLP
TQARLLRVLQERCVQPVGSAELFPVDIRIISATNRSLREQVQLGRFREDLYYRIGGLTLE
LPPLRERSDKQALFKRLWEHHREPTQWAGLSREVLDLFERHPWPGNLRQVSSVLQVALAM
AEEQPIRPEHLPDDFFVDLEMEPVETPEPLTVDLNDTEDLNRQLQAVGGNISHLARRLGV
SRNTLYKRLRQLES