Protein Info for AO356_21475 in Pseudomonas fluorescens FW300-N2C3

Annotation: oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 PF00106: adh_short" amino acids 14 to 194 (181 residues), 151.4 bits, see alignment E=3.3e-48 PF08659: KR" amino acids 16 to 170 (155 residues), 32.1 bits, see alignment E=1.6e-11 PF13561: adh_short_C2" amino acids 20 to 251 (232 residues), 223.7 bits, see alignment E=4.1e-70

Best Hits

Swiss-Prot: 78% identical to Y3106_PSEAE: Uncharacterized oxidoreductase PA3106 (PA3106) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: None (inferred from 99% identity to pba:PSEBR_a3853)

Predicted SEED Role

"Oxidoreductase, short chain dehydrogenase/reductase family" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H2P0 at UniProt or InterPro

Protein Sequence (257 amino acids)

>AO356_21475 oxidoreductase (Pseudomonas fluorescens FW300-N2C3)
VIELAAPPSGTHGRVALVTGAARGIGLGIAAWLICEGWQVVLTDLDRERGSKVAKTLGDH
AWFIAMDVADEAQVATGIAEVLGQFGRLDALVCNAAIADPHNITLESLDLAYWNRVLAVN
LGGPMLLAKHCAPYLRAHNGAIVNLASTRAAQSEPDTEAYAASKGGLLALTHALAISLGP
EIRVNAVSPGWIDARDPSQRRAQPLTDADHAQHPAGRVGTVEDVAAMVAWLLSRNAGFVT
GQEFVVDGGMTKKMIYE