Protein Info for AO356_20515 in Pseudomonas fluorescens FW300-N2C3

Annotation: late control protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 PF05954: Phage_GPD" amino acids 67 to 312 (246 residues), 40.8 bits, see alignment E=8.5e-15

Best Hits

KEGG orthology group: K06905, (no description) (inferred from 68% identity to avn:Avin_37340)

Predicted SEED Role

"Phage protein D"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WAK3 at UniProt or InterPro

Protein Sequence (416 amino acids)

>AO356_20515 late control protein (Pseudomonas fluorescens FW300-N2C3)
VIDTALAHVTGYLNRRDTVYSVPAFRITVDGKDIAQLISPRLMHLELADNRGIEADQLSI
TLSDHDGLLTIPPKGAVVRLWLGWSDTGLVDKGSYTVDETEHSGAPDVLNIRARSADLRK
GLKTKRERSWSNTTLGEVLGDIALGNGLTATVAGALAELPILQLDQASESDANLISRLGE
EFDAVVTVKAGHLLCLPAGGGKTASGADLPHITLNRTDGDQHRYLQADRGSYDGVRAYFY
DVNSAKKQEAIAGGGDSLKDLRHTYSDRQSALRAARSEFNRLQRGSATLSYTLARGRPDL
IPELTYTLQGVKQEIDAIIWYGGNVLHSLSADNGYTVSLELESKLPEDTVEGLAEENRGD
FTGVIAYYRDRKSGKEKAVTIGDQSKPKRLHWLYATEHSAKRAIDREWKRMKTERQ