Protein Info for AO356_20440 in Pseudomonas fluorescens FW300-N2C3

Annotation: integrase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 PF12167: Arm-DNA-bind_2" amino acids 3 to 64 (62 residues), 67.4 bits, see alignment E=1.3e-22 PF14659: Phage_int_SAM_3" amino acids 71 to 125 (55 residues), 35.9 bits, see alignment 1.1e-12 PF00589: Phage_integrase" amino acids 179 to 367 (189 residues), 57.4 bits, see alignment E=2.5e-19

Best Hits

KEGG orthology group: K14059, integrase (inferred from 58% identity to csa:Csal_1356)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9XCD0 at UniProt or InterPro

Protein Sequence (401 amino acids)

>AO356_20440 integrase (Pseudomonas fluorescens FW300-N2C3)
MADGVEARGNSVRVYFRFNGELCRELVPGGNTPENREHAKRLVTVIEYEIQAGTFDYRRH
FPESTKLAENTFGHYLDLWLTIKSNSVAATSFRGYKNKAEVHVRPRWGHIQIDQIDHLDL
QEWIQGPLSKRLKNKTIRDIICNVRQVFRLYRTRKKVAHDPTEGLFVRLPDPEAPDPFTR
AEIRQILETPTHRTQELLMVQFMIWAGPRVSETIALAWEDVDLEQGMVTFRRSKVRGAYR
VTKTRRSTRKVRLLEPAWDALRKLDAINQTKRAETVEVVERDNKTIRKHKLRFVFLNTKS
GLPHVSDFVVRDRFFKAHLNAAGVRYRGPGQCRHTYASQLLTTGVASIDWIAEQMGHTSA
NMIRQHYGMWINEDGPDVVGMLQIALNLQPIDKTVFSKATE