Protein Info for AO356_19415 in Pseudomonas fluorescens FW300-N2C3

Annotation: septum site-determining protein MinD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 270 TIGR01968: septum site-determining protein MinD" amino acids 2 to 267 (266 residues), 381.7 bits, see alignment E=8.2e-119 PF06564: CBP_BcsQ" amino acids 3 to 148 (146 residues), 27.4 bits, see alignment E=7.4e-10 PF13614: AAA_31" amino acids 3 to 156 (154 residues), 63.8 bits, see alignment E=6e-21 PF10609: ParA" amino acids 3 to 245 (243 residues), 51.6 bits, see alignment E=2.7e-17 PF09140: MipZ" amino acids 4 to 142 (139 residues), 34 bits, see alignment E=6e-12 PF01656: CbiA" amino acids 5 to 226 (222 residues), 68.4 bits, see alignment E=1.8e-22 PF02374: ArsA_ATPase" amino acids 6 to 40 (35 residues), 31.1 bits, see alignment 4.5e-11

Best Hits

Swiss-Prot: 75% identical to MIND_ECOLI: Septum site-determining protein MinD (minD) from Escherichia coli (strain K12)

KEGG orthology group: K03609, septum site-determining protein MinD (inferred from 100% identity to pba:PSEBR_a4192)

Predicted SEED Role

"Septum site-determining protein MinD" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WKS1 at UniProt or InterPro

Protein Sequence (270 amino acids)

>AO356_19415 septum site-determining protein MinD (Pseudomonas fluorescens FW300-N2C3)
LAKILVVTSGKGGVGKTTTSAAIGTGLALRGHKTVIVDFDVGLRNLDLIMGCERRVVYDF
VNVVNGEANLQQALIKDKRLENLYVLAASQTRDKDALTQEGVEKVLMQLKEDFEFVVCDS
PAGIEKGAHLAMYFADEAIVVTNPEVSSVRDSDRMLGLLASKSRRAEKGEEPIKEHLLLT
RYNPQRVSDGEMLGVEDVKEILAVTLLGVIPESQAVLKASNSGVPVILDDQSDAGQAYSD
AVDRLLGKTVEHRFLDVTKKGFFERLFGGR