Protein Info for AO356_19325 in Pseudomonas fluorescens FW300-N2C3

Annotation: type IV secretion protein Rhs

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1584 transmembrane" amino acids 288 to 310 (23 residues), see Phobius details amino acids 322 to 341 (20 residues), see Phobius details PF20148: DUF6531" amino acids 404 to 477 (74 residues), 69.1 bits, see alignment 5.1e-23 TIGR01643: YD repeat (two copies)" amino acids 594 to 635 (42 residues), 17.6 bits, see alignment (E = 4.1e-07) amino acids 681 to 720 (40 residues), 19.6 bits, see alignment (E = 1e-07) amino acids 764 to 804 (41 residues), 38.3 bits, see alignment (E = 1.3e-13) amino acids 805 to 845 (41 residues), 21.1 bits, see alignment (E = 3.4e-08) amino acids 847 to 888 (42 residues), 36.4 bits, see alignment (E = 5e-13) amino acids 1000 to 1031 (32 residues), 24.2 bits, see alignment (E = 3.5e-09) amino acids 1128 to 1158 (31 residues), 17.3 bits, see alignment (E = 5.2e-07) amino acids 1223 to 1255 (33 residues), 32 bits, see alignment (E = 1.2e-11) PF05593: RHS_repeat" amino acids 702 to 735 (34 residues), 30.3 bits, see alignment (E = 6.6e-11) amino acids 764 to 799 (36 residues), 34.8 bits, see alignment (E = 2.5e-12) amino acids 784 to 820 (37 residues), 27.2 bits, see alignment (E = 6e-10) amino acids 826 to 863 (38 residues), 36.8 bits, see alignment (E = 6e-13) amino acids 868 to 905 (38 residues), 27.1 bits, see alignment (E = 6.6e-10) amino acids 980 to 1012 (33 residues), 27.9 bits, see alignment (E = 3.7e-10) amino acids 1000 to 1031 (32 residues), 23.7 bits, see alignment (E = 7.6e-09) amino acids 1223 to 1256 (34 residues), 38 bits, see alignment (E = 2.5e-13) PF03527: RHS" amino acids 1304 to 1338 (35 residues), 55.8 bits, see alignment (E = 4.8e-19) TIGR03696: RHS repeat-associated core domain" amino acids 1330 to 1409 (80 residues), 86.1 bits, see alignment 1.8e-28

Best Hits

KEGG orthology group: None (inferred from 90% identity to pba:PSEBR_a4210)

Predicted SEED Role

"Rhs family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9XBV0 at UniProt or InterPro

Protein Sequence (1584 amino acids)

>AO356_19325 type IV secretion protein Rhs (Pseudomonas fluorescens FW300-N2C3)
MEQVNRIEQELDSFKDTLSVYRDQLERWYSRAADRASHAVDLPSLMGMERLIRFGDSTTV
VSSGDDDFLSTVVQCPLGGVMTIESKFESVYDIPLGDIVVDVVEVNSGKVTPVTLDAQGL
GTFEGEAGKSYRVHVQDEVSPGQIEKLFSSYDGLTRDLTDWLRGEWQGFKPRWARQSLAT
SAAAVGNGLLAGSWAAIEGVWDSISLLSDILKDPGQFVDRLGDSADQLKKLARDTPLLMA
KLQLLASDEAALCLLVRTASLWLEMLPPSEVAGDTAEALSTVVVQCVIDLLIGVVLTFAG
AGAGIAYLSMRLARHGATLLNAMQRFVKAIFAVVNGFMAYVDRYKTVAARGVAAGIKKGR
LQLRWDAQRNTTLKKHEPHDDAPAQSKNPNGDSADTAAQTQTSGCPVSMVTGEELLTLDD
GTLDGRLPFVFTRLYRTSAVALDVGLGRGWSHALAHRLELDGEQITWVDQENRRTIFPLP
TTQRPAIHNSLARAAIYLGAAPDELIIAQPGENAPFLHFRDGHLIALSDRYDNRLTVQRN
IHGDISRLDNGAGRSLRLRYEQRHLVAVDYQSFHPALTLDEAWRTEQTLVSYRYDGRFRL
IEATNAAGESERYDYDDQHVILQRQLAGGASFYWEWQGVGPASRCVRHWASFAQMDSRYT
WGEDGRVTVRHLDGSQEVYVHDDRARLVRKVEPDGGEHLKAYDEQGRLIAEQDPLGAVSE
YRYDDVGRLVALIPPDEAPTSYEYRNGFLHARSRGKAVWSYRRNARGDVIASIDPDGQRT
EYAYDAHGQLLARYDPDGGEHRFTWSRLGQLTEEVLPDGGRRCFAYDALGRLLSRRDEHG
ALTHYQWDAVGRLLQVTLPTGATRAWSYNAYGKVIAERDEQGRTTRYEYADDLHLVSRRL
NPDGSELKYRYDSARLLLTEIENESGERYQLDYTPNGLIRQQVGFDGQRTAYAYDLNGHL
LEKTEHGEDGSQRITRYQRDAAGRLRIKTLPDGQAIEYRYDDLGRLIQVDDGSDHPLAFE
YDAQDRLVTEHQGWGTLRYRYDACGRLNHLRLPEDSQLDYHHAPGGALTAIDLNGARLTE
HRVDGGRERQRQQGLLRSDYTYDEQGRLKAQTVWQNPQQQLFWRDYAYSPRGNLQSLSDQ
RNRRRYQYDPLDRLTRIDFSHSEPPEHFSHDAAGNLLMQDRPGPTTLKGNRLLREGDRHY
DYDAFGNLIRERRGQALVSAYRYDSQHRLIGVTGADGRETSYRYDAFGRRISKTVDGLTT
EFFWQGDQLVAENSPRHHRSYVYEPGTFRPLALLDGEGPDARPFYYHLDHLGTPQELTNP
AGQIVWSARYNGYGKLTELTHGSGEQLEQPLRFQGQYFDPESGLHYNRHRYYNPETGRYL
TPDPSKLAGGLNGYRYTVNPTGWVDPLGLVDCPGQGGCRPAVGDQDPAGKVQVDEGEPRL
PKPTAAELAEKEVRRLDREQGMHMVGKHSPAVPDQVWKQRAIDGTDPVTGRTPSHRKGNP
SSRFYSWELQLKAYELAISKRNSGHVLLTDKSGSKYLRADFPGAGEGYIPNARDPNDPKL
VKMNRIEMKFDRDTEIPFTLYPIK