Protein Info for AO356_17715 in Pseudomonas fluorescens FW300-N2C3

Annotation: chemotaxis protein CheY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 455 PF00072: Response_reg" amino acids 15 to 126 (112 residues), 94.4 bits, see alignment E=4.9e-31 PF13487: HD_5" amino acids 194 to 359 (166 residues), 137 bits, see alignment E=5.6e-44

Best Hits

KEGG orthology group: None (inferred from 96% identity to pba:PSEBR_a4511)

Predicted SEED Role

"Response regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9X0P3 at UniProt or InterPro

Protein Sequence (455 amino acids)

>AO356_17715 chemotaxis protein CheY (Pseudomonas fluorescens FW300-N2C3)
MEDQSPDVPVKKPVVLLVDDEESILNSLRRLLRSQPYEILLADSGAKALEILKERPVDLV
MTDARMPNMDGATLLAEIRKLYPSTLRILLTGYADVDMMTKAINEGQLYRYLSKPWNDEE
LVQALRQALAHQHSESERQRLEALNREQNQQLKTLNATLEKRVASRTSELQQTADMLDLA
YDELKRSYVTSTEVFSLIANLRLPKPKQTNRQIIELIRVYSRLHFLDESTDRDLTMAAAL
YNIGKLSWTDNMMVTPADLLHHNELDLYRSYPKQSESLLMTLDPMKDAARIIRHHQERWD
GSGFPEHLKGEAIPFGSRLLKLAVDFIELQRGLILERQMNSDEALVYIRKYAGKLYDPDM
IEDFIKACGEYLDDVTLSDPTVKVMNTRELVAGMILARNLNADNGMLLLNAGKVMSGPLV
EKLIAFESMEGARYSVFVKIPEELADPSAPKPILG