Protein Info for AO356_17515 in Pseudomonas fluorescens FW300-N2C3

Annotation: murein transglycosylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 464 PF00497: SBP_bac_3" amino acids 21 to 244 (224 residues), 114.6 bits, see alignment E=4.9e-37 PF01464: SLT" amino acids 271 to 378 (108 residues), 87.7 bits, see alignment E=4.4e-29

Best Hits

Swiss-Prot: 95% identical to MLTF_PSEPF: Membrane-bound lytic murein transglycosylase F (mltF) from Pseudomonas fluorescens (strain Pf0-1)

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a4550)

Predicted SEED Role

"Transglycosylase, Slt family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W514 at UniProt or InterPro

Protein Sequence (464 amino acids)

>AO356_17515 murein transglycosylase (Pseudomonas fluorescens FW300-N2C3)
VLSGCVEKPNTLERVKEDGVLRVVTRNSPATYFEDRNGETGFEYELVKRFADDLGVELKI
ETADNLDDLFNQIGKPNGPVLAAAGLVSSEQRKKQVRFSHAYLEVTPQVIYRNGQSRPTD
AAALAGKKIMVLKGSSHAEQLAQLKQQYPGIEYEESDAVEVVDLLRMVDEGQIDLTLVDS
NEVAMNQVYFPNVRVAFDLGDARNQSWAVAPGEDNSLLNEINSYLDKVQKNGTLQRLKDR
YYGHVDVLGYMGATTFAQHLQQRLPKYEQHFKAYAKQEKVDWRLLAAIGYQESLWQPAVT
SKTGVRGLMMLTQNTAQAMGVSNRLDPKQSIMGGAKYLAYMKDQLDESIQEPDRTWFALA
AYNVGSGHLDDARKLAAKEGLNPDKWLDVKKILPRLSQKQWYSKTRYGYARGGEPVHFVA
NIRRYYDILTWVTQPQLEGDQVAEGNLHVPGVDKSKPNQESPQL