Protein Info for AO356_17190 in Pseudomonas fluorescens FW300-N2C3

Annotation: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR00325: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
  • amino acids 2 to 298 (297 residues), 395.1 bits, E=1e-122
• PF03331: LpxC
  • amino acids 4 to 275 (272 residues), 375 bits, E=1.2e-116

Best Hits

Swiss-Prot: 99% identical to LPXC_PSEF5: UDP-3-O-acyl-N-acetylglucosamine deacetylase (lpxC) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)

KEGG orthology group: K02535, UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC: 3.5.1.-] (inferred from 99% identity to pfl:PFL_5055)

MetaCyc: 56% identical to UDP-3-O-acyl-N-acetylglucosamine deacetylase (Escherichia coli K-12 substr. MG1655)
UDPACYLGLCNACDEACETYL-RXN [EC: 3.5.1.108]

Predicted SEED Role

"UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108)" (EC 3.5.1.108)

MetaCyc Pathways

• lipid IV_A biosynthesis (P. gingivalis) (9/9 steps found)
• superpathway of (Kdo)₂-lipid A biosynthesis (14/17 steps found)
• lipid IV_A biosynthesis (E. coli) (6/6 steps found)
• lipid IV_A biosynthesis (H. pylori) (6/6 steps found)
• lipid IV_A biosynthesis (P. putida) (6/6 steps found)
• lipid IV_A biosynthesis (Vibrio cholerae serogroup O1 El Tor) (6/6 steps found)
• lipid IV_A biosynthesis (generic) (6/6 steps found)
• lipid IV_A biosynthesis (2,3-diamino-2,3-dideoxy-D-glucopyranose-containing) (5/6 steps found)
• superpathway of Kdo₂-lipid A biosynthesis (18/25 steps found)

KEGG Metabolic Maps

• 1,4-Dichlorobenzene degradation
• Caprolactam degradation
• Glutathione metabolism
• Lipopolysaccharide biosynthesis
• Lysine biosynthesis
• Nicotinate and nicotinamide metabolism
• Nucleotide sugars metabolism
• Sphingolipid metabolism

Isozymes

Compare fitness of predicted isozymes for: 3.5.1.-

Use Curated BLAST to search for 3.5.1.- or 3.5.1.108

Sequence Analysis Tools

See A0A0N9WYT3 at UniProt or InterPro

Protein Sequence (303 amino acids)

>AO356_17190 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (Pseudomonas fluorescens FW300-N2C3)
MIKQRTLKNIIRATGVGLHSGEKVYLTLKPAPIDTGIVFCRADLDPVVQIPARAENVGET
TMSTTLVNGDTKVDTVEHLLSAMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLE
EQDAAKKFIRILREVTVEDGDKRATFVPFEGFKVSFEIDFDHPVFRDRTQSASVDFSSTS
FVKEVSRARTFGFMSDIEYLRKHNLALGGSVENAIVVDSDGVLNEDGLRYEDEFVKHKIL
DAIGDLYLLGNSLIGEFKGFKSGHALNNQLLRKLIEQKDAWEVVTFEDASTAPISYMRPV
AAV