Protein Info for AO356_16545 in Pseudomonas fluorescens FW300-N2C3

Annotation: FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF00890: FAD_binding_2" amino acids 6 to 47 (42 residues), 21.1 bits, see alignment 2.5e-08 PF13450: NAD_binding_8" amino acids 7 to 60 (54 residues), 49.4 bits, see alignment 6.8e-17 PF01593: Amino_oxidase" amino acids 12 to 68 (57 residues), 38.7 bits, see alignment E=1.2e-13 amino acids 109 to 323 (215 residues), 56.9 bits, see alignment E=3.6e-19

Best Hits

Swiss-Prot: 81% identical to RNLS_PSE14: Renalase (PSPPH_1014) from Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)

KEGG orthology group: K06955, (no description) (inferred from 98% identity to pba:PSEBR_a4748)

Predicted SEED Role

"COG3380: Amine oxidase, flavin-containing"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W9J6 at UniProt or InterPro

Protein Sequence (328 amino acids)

>AO356_16545 FAD-dependent oxidoreductase (Pseudomonas fluorescens FW300-N2C3)
MTVPIAIIGTGIAGLSAAQALTEAGHIVQLFDKSHGSGGRMSSKRSDAGALDMGAQYFTA
RDRRFVTEVQRWQANGWAAEWNPQLYNFQNGQLSPSPDEQTRWVGTPRMSAITRALLDKL
QVQFSCRITEVYRGQEHWHLQDAEGFTHGPFGHVVIATPAPQATALLAAVPKLAAVAAGV
KMDPTWAVALAFEAPLDTPMEGCFVQDSPLDWLARNRSKPGRDSKLDTWVLHATSDWSRQ
HIDLSKEAVIEHLHGAFAELLHSAMPAPSFSVAHRWLYARPAGSHEWGALADADLGLYVC
GDWCLSGRVEGAWLSGQEAARRLHASLQ