Protein Info for AO356_16445 in Pseudomonas fluorescens FW300-N2C3

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 transmembrane" amino acids 12 to 39 (28 residues), see Phobius details amino acids 45 to 67 (23 residues), see Phobius details amino acids 79 to 100 (22 residues), see Phobius details amino acids 106 to 126 (21 residues), see Phobius details amino acids 140 to 161 (22 residues), see Phobius details amino acids 167 to 188 (22 residues), see Phobius details amino acids 209 to 234 (26 residues), see Phobius details amino acids 247 to 267 (21 residues), see Phobius details amino acids 279 to 296 (18 residues), see Phobius details amino acids 303 to 325 (23 residues), see Phobius details amino acids 337 to 359 (23 residues), see Phobius details amino acids 365 to 386 (22 residues), see Phobius details PF07690: MFS_1" amino acids 18 to 269 (252 residues), 36.1 bits, see alignment E=1.9e-13 amino acids 220 to 384 (165 residues), 34.7 bits, see alignment E=4.9e-13

Best Hits

KEGG orthology group: None (inferred from 78% identity to xbo:XBJ1_3886)

Predicted SEED Role

"ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9X0N8 at UniProt or InterPro

Protein Sequence (402 amino acids)

>AO356_16445 MFS transporter (Pseudomonas fluorescens FW300-N2C3)
MANPYRELFSAPGAIGLVITSAIARLPQAMIGIGIITMLVQQTGLYWLAGAVAGTYTLAT
ALIGPQVSKLVDRRGQRRVLPPLAAFSTSMLLALIIAVYMSAPVTLLFILAALAGTMPSM
PAMIRARWIQLFRGKPQLHTAFSLDTVITELAFVIGPPLAIGLSISFFAQAGPLAAVLLL
IVGVTAFLMQRQTEPKVVVGTARSTGSALLIPGVPTIVLALLAMGVIGGSVDVAVVAFAN
AQGWPASASFILATYALGSLIAGLTFGALRASRPIDQQFFIGSLVTAVTAVLPILSPNVY
VLSGMLFLAGMSFAPTMVIIMNLGTMIVPPSRITEGFTWMSTGVSIGVALGGVLAGLVID
ACGAQAGFGVAIVAGLAMVLIVFTGLRTLRASSATGHEITFQ