Protein Info for AO356_16285 in Pseudomonas fluorescens FW300-N2C3

Annotation: Short chain fatty acid transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 472 transmembrane" amino acids 29 to 49 (21 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 104 to 131 (28 residues), see Phobius details amino acids 146 to 168 (23 residues), see Phobius details amino acids 194 to 217 (24 residues), see Phobius details amino acids 253 to 271 (19 residues), see Phobius details amino acids 277 to 301 (25 residues), see Phobius details amino acids 314 to 334 (21 residues), see Phobius details amino acids 361 to 384 (24 residues), see Phobius details amino acids 414 to 431 (18 residues), see Phobius details amino acids 441 to 466 (26 residues), see Phobius details PF02667: SCFA_trans" amino acids 12 to 455 (444 residues), 280.1 bits, see alignment E=1.9e-87

Best Hits

KEGG orthology group: K02106, short-chain fatty acids transporter (inferred from 100% identity to pba:PSEBR_a4776)

Predicted SEED Role

"Short chain fatty acids transporter" in subsystem Polyhydroxybutyrate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H2B9 at UniProt or InterPro

Protein Sequence (472 amino acids)

>AO356_16285 Short chain fatty acid transporter (Pseudomonas fluorescens FW300-N2C3)
VTTDIEDSRSARFALRCSSFAERWFPDSWVFAALAVLVVAVATQFIGATPTAAAMAFGDG
FWSLIPFTMQMAFVVIGGYVVASSPPAVKLIDRLARIPTNGRSAVAWVALISMVASLLNW
GLSLVFGGLLVRALARRTDLKMDYRAAGAAAYLGLGAVWALGLSSSAAQLQANPASLPPS
ILSITGVIPFTQTIFLWQSGVMLLALIVISLIVAYATAPGPNSARDAAACGIDPSFSMPA
LQPRTRPGEWLEHSPLLTIALVLLAAGWLFHEFSTKPAISAISGLNTYNFLFIMLGALLH
WRPRSFLDAVARAVPTTTGVLIQFPLYGSIAALLTTVKGSDAQTLAHHISTFFVQIASHD
TYALLMGVYSAVLGFFIPSGGGKWIIEAPYVMQVANDLNYHLGWAVQIYNAAEALPNLIN
PFYMLPLLGVLGLKARDLIGFSFVQLLVHTPLVLALLWALGTTLSYLPPVMP