Protein Info for AO356_15870 in Pseudomonas fluorescens FW300-N2C3

Annotation: pilus assembly protein PilV

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 153 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details PF07963: N_methyl" amino acids 6 to 31 (26 residues), 30.8 bits, see alignment 7.6e-12 TIGR02523: type IV pilus modification protein PilV" amino acids 9 to 71 (63 residues), 87.1 bits, see alignment E=1.5e-28 TIGR02532: prepilin-type N-terminal cleavage/methylation domain" amino acids 9 to 32 (24 residues), 24.7 bits, see alignment 1.5e-09

Best Hits

KEGG orthology group: K02671, type IV pilus assembly protein PilV (inferred from 95% identity to pba:PSEBR_a4851)

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilV" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WJ39 at UniProt or InterPro

Protein Sequence (153 amino acids)

>AO356_15870 pilus assembly protein PilV (Pseudomonas fluorescens FW300-N2C3)
MKDCSKRAQEGMTLIEVLVAVLILGVGLLGAAMIQLNALKYTDSSRMTSQASFIAYDLLD
RIRANSGADYTVTPPSSPNLNVARDQDLYDFKTNIIAFGGATATGTIALNQRVYTITIAW
DDARAANTTNAAEARRSFVLTSRVAVDPPGTPP