Protein Info for AO356_15695 in Pseudomonas fluorescens FW300-N2C3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 65 PF04328: Sel_put" amino acids 5 to 65 (61 residues), 100.9 bits, see alignment E=1.6e-33

Best Hits

Swiss-Prot: 72% identical to YBDD_ECOL6: Uncharacterized protein YbdD (ybdD) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: None (inferred from 91% identity to psb:Psyr_4272)

Predicted SEED Role

"COG2879, Hypothetical small protein yjiX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WJ21 at UniProt or InterPro

Protein Sequence (65 amino acids)

>AO356_15695 hypothetical protein (Pseudomonas fluorescens FW300-N2C3)
MFNDLSRLGKYLGQAARLMVGMPDYDNYVEHMQTKHPDKPMMDYEAFFRERQEARYGGKG
GPKCC