Protein Info for AO356_15540 in Pseudomonas fluorescens FW300-N2C3
Annotation: histone deacetylase superfamily protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 48% identical to Y1628_SYNP2: Uncharacterized protein SYNPCC7002_A1628 (SYNPCC7002_A1628) from Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)
KEGG orthology group: None (inferred from 99% identity to pba:PSEBR_a4919)Predicted SEED Role
"Deacetylases, including yeast histone deacetylase and acetoin utilization protein" in subsystem Hydantoin metabolism
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A0N9WY55 at UniProt or InterPro
Protein Sequence (306 amino acids)
>AO356_15540 histone deacetylase superfamily protein (Pseudomonas fluorescens FW300-N2C3) MSLPLIYHEDYSPEFPAEHRFPMDKFRLLRDHLVDSGLTRDADLLRPALCPPDILALAHD RAYIERYMGGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTH HAHYDHPAGFCIFNDLAVISRYFLASGRVSRVLIFDCDVHQGDGTARILHDTPDAVTVSL HCEKNFPARKAHSDWDIPLPMGMEDAAYLKVVDDALNYLLPLYQPDLVLYDAGVDVHKDD ALGYLKLTDEGLAARDESVMRHCLGRDIPVVGVIGGGYSKDRQALARRHGILHHSAQRVW TSSGCH