Protein Info for AO356_15300 in Pseudomonas fluorescens FW300-N2C3

Annotation: ribosome silencing factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 164 TIGR00090: ribosome silencing factor" amino acids 36 to 133 (98 residues), 125.6 bits, see alignment E=3.6e-41 PF02410: RsfS" amino acids 38 to 133 (96 residues), 119.9 bits, see alignment E=2.2e-39

Best Hits

KEGG orthology group: K09710, ribosome-associated protein (inferred from 99% identity to pba:PSEBR_a4966)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WY24 at UniProt or InterPro

Protein Sequence (164 amino acids)

>AO356_15300 ribosome silencing factor (Pseudomonas fluorescens FW300-N2C3)
MTDKDVNKVKRKGTFKSAPLPVEAHTGVALVGEELVKVAVAALEDVKAQDIQVIDVREKQ
SITDYMIIATGTSNRQIGAMLDKVREAVKAQGVKPLGEEGKGDSDWVLLDMDDVIVHMMT
ASARQFYDLERLWAGAEQSRSASAAHHSPENPHEHFTKLNKDQQ