Protein Info for AO356_15230 in Pseudomonas fluorescens FW300-N2C3

Annotation: Fis family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 635 PF01590: GAF" amino acids 79 to 204 (126 residues), 42.4 bits, see alignment E=3.1e-14 PF00158: Sigma54_activat" amino acids 338 to 500 (163 residues), 214.3 bits, see alignment E=2.8e-67 PF14532: Sigma54_activ_2" amino acids 338 to 505 (168 residues), 64.3 bits, see alignment E=4.5e-21 PF07728: AAA_5" amino acids 357 to 477 (121 residues), 25.1 bits, see alignment E=4.8e-09 PF02954: HTH_8" amino acids 591 to 630 (40 residues), 54.2 bits, see alignment 2.8e-18

Best Hits

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a4980)

Predicted SEED Role

"Nitrogen regulation protein NR(I)" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W911 at UniProt or InterPro

Protein Sequence (635 amino acids)

>AO356_15230 Fis family transcriptional regulator (Pseudomonas fluorescens FW300-N2C3)
MHSNHLSRHAQQVLTVTQGKAHLQGPGSDPSIARSWLRCLEDYHLDPAQNLAPTVLEHGR
VLESRERLQQVLHIAGNEMTSLHQQLSGAGHAVLLTDARGVILNCVTAPSERKIFERAGL
WLGADWSEACEGTNGIGTCLVERQALTIHQEEHFRGRHTGLTCSASPVFDPQGELLAVLD
VSSARPDVSRQSQFHTMALVNLSAKMIESCYFLRCFDNQWLLRFHLQAESVGLFSEGLLA
FDGEGRICAVNQSALNLLGHIRGGLLGQRVEDFFDCSLDELLGRASAQASASWPLRTRDG
RHLFAVLRGQPRSVPVPVAPALLKAIEPTRLPGICLGDAALQEHFRKALRVFERDVPLLI
HGETGSGKEAFAKAVHHASQRAGKHFVALNCAAIPESLIESELFGYRGGSFTGARKEGMR
GKLQQADGGTLFLDEIGDMPLALQTRLLRVLEDRQVVPIGGEPEAVNVRIISATHRQLLD
RVRDGSFREDLYYRLNGLEIPLPPLRERSDKSQLLDFLLAEESGAETVLIEEPARQALLG
FDWPGNVRQLRNVLRTLAALCDGGRIGLEDLPAMIRQRPVAVVETVAERPLEDAERLVLL
DALERQRWHMTHTAEQLGISRNTLYRKLRKHAIAR