Protein Info for AO356_15110 in Pseudomonas fluorescens FW300-N2C3

Annotation: type IV secretion protein Rhs

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1612 PF20148: DUF6531" amino acids 445 to 518 (74 residues), 69.1 bits, see alignment 6.9e-23 TIGR01643: YD repeat (two copies)" amino acids 635 to 676 (42 residues), 17.6 bits, see alignment (E = 4.2e-07) amino acids 722 to 761 (40 residues), 19.6 bits, see alignment (E = 1e-07) amino acids 805 to 844 (40 residues), 32.9 bits, see alignment (E = 6.3e-12) amino acids 829 to 863 (35 residues), 17.5 bits, see alignment (E = 4.6e-07) amino acids 846 to 886 (41 residues), 21 bits, see alignment (E = 3.5e-08) amino acids 867 to 902 (36 residues), 24.5 bits, see alignment (E = 2.8e-09) amino acids 888 to 929 (42 residues), 36.5 bits, see alignment (E = 4.7e-13) amino acids 1041 to 1072 (32 residues), 24.1 bits, see alignment (E = 3.7e-09) amino acids 1169 to 1199 (31 residues), 17.3 bits, see alignment (E = 5.3e-07) amino acids 1264 to 1295 (32 residues), 32.1 bits, see alignment (E = 1.2e-11) PF05593: RHS_repeat" amino acids 743 to 776 (34 residues), 29 bits, see alignment (E = 2.3e-10) amino acids 805 to 840 (36 residues), 32.2 bits, see alignment (E = 2.3e-11) amino acids 825 to 861 (37 residues), 23.7 bits, see alignment (E = 1e-08) amino acids 867 to 904 (38 residues), 36.8 bits, see alignment (E = 8.2e-13) amino acids 909 to 946 (38 residues), 27.1 bits, see alignment (E = 9.1e-10) amino acids 1021 to 1053 (33 residues), 27.9 bits, see alignment (E = 5e-10) amino acids 1041 to 1072 (32 residues), 23.6 bits, see alignment (E = 1.1e-08) amino acids 1264 to 1295 (32 residues), 37.1 bits, see alignment (E = 6.2e-13) PF03527: RHS" amino acids 1345 to 1379 (35 residues), 55.8 bits, see alignment (E = 6.5e-19) TIGR03696: RHS repeat-associated core domain" amino acids 1371 to 1450 (80 residues), 86.4 bits, see alignment 1.4e-28 PF02917: Pertussis_S1" amino acids 1484 to 1543 (60 residues), 23.1 bits, see alignment (E = 1.2e-08)

Best Hits

KEGG orthology group: None (inferred from 92% identity to pba:PSEBR_a5003)

Predicted SEED Role

"Rhs family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W8Z1 at UniProt or InterPro

Protein Sequence (1612 amino acids)

>AO356_15110 type IV secretion protein Rhs (Pseudomonas fluorescens FW300-N2C3)
MPDYDKILAQGNVIGSLVMAAMDPEQPDVEAVFQDFRTCLNDYDAWAESFWAGWALDLEQ
VFKVGNEVSLAAPKNLDKPVSAAVVACPAEGPLTLVHMFQAARFVPIGDTPVMLEPVIDG
MPGKEIFGEPIHHVIGPSGILEVPECWRGQRYRITFFPHVTADHVKALYASYQGVIDELE
GWLKAEWEQFQPLWAEFSDAGFLQRYDVLQQADWRGFKNALHQLWDDVKQVFGLLADLQA
NSEQLLEYLTQAELEQLLKASSEAIAKGLMVLSDEPLLFVHVAAFTSWLRMLPPQYAAEV
VGELRASVLINFLLMRLTGGLGLGLRMSGNVLGRVRSERAREWLLASSLRLGQLTPDRLN
QHADVLKPLVVSQRAPLKPTPVGPLHITPEHSAPLSVSNPAAVAREKSQPSTRLSEHEPH
DDAPAQSKNPNGDSADTAAQTQTSGCPVSMVTGEELLTLDDGTLDGRLPFVFTRLYRTSA
VALDVGLGRGWSHALAHRLELDGEQITWVDQENRRTIFPLPTTQRPAIHNSLARAAIYLG
AEPDELIIAQPGENAPFLHFRDGHLIALSDRYDNRLTVQRNIHGDISRLDNGAGRSLRLR
YEQRHLVAVDYQSFHPALTLDEAWRTEQTLVSYRYDGRFRLIEATNAAGESERYDYDDQH
VILQRQLAGGASFYWEWQGVGAASRCVRHWASFAQMDSRYTWGEDGRVTVRHLDGSQEVY
VHDDRARLVRKVEPDGGEHLKAYDEQGRLIAEQDPLGAVSEYRYDDVGRLLALIPPDEAP
TSYEYRNGFLHARSRGKAVWSYRRNARGDVIASIDPDGQRTEYAYDAHGQLLARYEPDGG
EHRFTWSRLGQLTEEVLPDGGRRCFAYDALGRLLSRRDEHGALTHYQWDAVGRLLQVTLP
TGATRAWSYNAYGKVIAERDEQGRTTRYEYADDLHLVSRRLNPDGSELKYRYDSARLLLT
EIENESGERYQLDYTPNGLIRQQVGFDGQRTAYAYDLNGHLLEKTEHGEDGSQRITRYQR
DAAGRLRIKTLPDGQAIEYRYDDLGRLIQVDDGSDHPLAFEYDAQDRLVTEHQGWGTLRY
RYDACGRLNHLRLPDDSQLDYHHASGGALTAIDLNGARLTEHRVDGGRERQRRQGQLRSD
YTYDEQGRLKAQTVWQNPQQQLFWRDYAYSPRGNLQSLSDQRNRRRYQYDPLDRLTRIDF
SHSEPPEHFSHDPAGNLLMQDRPGPTTLKGNRLLREGDRHYDYDAFGNLIRERRGQALVS
AYRYDSQHRLIGVTGADGRETSYRYDAFGRRISKTVGGLTTEFFWQGDQLVAENSPHHHR
SYIYEPGTFRPLALLDGEGPDARPFYYHLDHLGTPQELTNPAGQIVWSARYNGYGKLTEL
THGSAEQLEQPLRFQGQYFDPESGLHYNRHRYYNPETGRYLTPDPSKLAGGLNGYRYTVN
PTGWVDPLGLVDCPGQGGCRPAVGDQDPAAKVGVDEGVKSPPKPTYLYRGDLRKPEVIFK
EGFMSLGKSTDLLLHVWDNRDPPSNFVSTTTDVDIGTYFGTKYNTRKGYLYVLKKIPGRD
VNKELPRNDVPYSYEREIAIPDRVKAEDILGATPLNKDGSYVGYSIPNPQRK