Protein Info for AO356_14985 in Pseudomonas fluorescens FW300-N2C3

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 626 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF07715: Plug" amino acids 45 to 150 (106 residues), 97.8 bits, see alignment E=5.2e-32 PF00593: TonB_dep_Rec" amino acids 184 to 590 (407 residues), 136.6 bits, see alignment E=2.4e-43

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 96% identity to pba:PSEBR_a5030)

Predicted SEED Role

"Outer membrane vitamin B12 receptor BtuB" in subsystem Coenzyme B12 biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WIR1 at UniProt or InterPro

Protein Sequence (626 amino acids)

>AO356_14985 TonB-dependent receptor (Pseudomonas fluorescens FW300-N2C3)
MKLRLALTLSLLPTPDLLADTFERDQALKLPDIVISANRQVEARNDSSAANTVFTRDDIE
RLQPASVTDLLSRVPGVQVAPLGGRGSLPGIYIRGTKSAQSLVLVDGQRIGNATSGDSNL
QRLNINQIERVEVLRGSRSVIYGADAVGGVIQIFTRRGNTQGLQPRLHVGVGSHQTWERS
LGLSGGDEQTRFNLGASLDDSAGSNRTHESYASDRDDDANRNQPFSLSLSHAASDDLEVG
LNLLDNRGKSEYDNPFGRFDPSTFESLPQQPYSEFAVSSFSTYVDGRINDTWKSRLELGH
SENREKTFDKLSDVREVFNTYRDSVTWQNDVTLDERNSLIVGGDWYQDRVNSSTPFDEDS
RWNRAAFIQHRFQAETFSTELGLRRDQNQQFGGQNSWSGTLTVPVNPANDLLLTYSESFR
APTFNDLYYPDFSNPDLKPETAKSYELQWRSQLSDSARLETSLYRTDLEDAIIFGRDSRP
QNVASARIDGFEMAYLQDVFGWQGNLALAIIDPRDRDSGHTLARRARRTLSLDLDRQFDR
LGLGATWQAVSGSYDDEDNRNALGGYALLGLRGSWALTREVKLEMKVDNLLDKGYSRALY
SHDGGQYGYREEGRAWLFGVTWTPSL