Protein Info for AO356_14910 in Pseudomonas fluorescens FW300-N2C3

Annotation: thioredoxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 PF00085: Thioredoxin" amino acids 11 to 109 (99 residues), 93.4 bits, see alignment E=2.7e-30 TIGR01068: thioredoxin" amino acids 15 to 111 (97 residues), 103.3 bits, see alignment E=3.3e-34 PF13098: Thioredoxin_2" amino acids 26 to 108 (83 residues), 31.6 bits, see alignment E=6.3e-11 PF12895: ANAPC3" amino acids 110 to 179 (70 residues), 30.1 bits, see alignment E=1.7e-10 PF14559: TPR_19" amino acids 130 to 196 (67 residues), 52.7 bits, see alignment E=1.6e-17 PF14561: TPR_20" amino acids 202 to 290 (89 residues), 92.6 bits, see alignment E=5.4e-30

Best Hits

KEGG orthology group: K05838, putative thioredoxin (inferred from 99% identity to pba:PSEBR_a5044)

Predicted SEED Role

"FIG000875: Thioredoxin domain-containing protein EC-YbbN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H287 at UniProt or InterPro

Protein Sequence (290 amino acids)

>AO356_14910 thioredoxin (Pseudomonas fluorescens FW300-N2C3)
MTQETPYIFDATTADFDQSVIANSFHKPVLVDFWAEWCAPCKALMPMLQTIAESYQGELL
LAKVNCDIEQDIVARFGIRSLPTVVLFKDGQPVDGFAGAQPESAVRTMLEPHVQMPPPAA
ADPFEQAQALFDDGRFADAEAVLTVLLGEDNTNAKALILYARCLTERGELDEAQTVLDAV
KSDEHKAALAGAKAQIQFLGLAKHLPDAADLKARLAKDPQDDEAVYQLAIQQLARQQYEA
ALDALLKLFVRNRSYSEGLPHKTLLQVFELLGNDHPLVTTYRRKLFAALY