Protein Info for AO356_14835 in Pseudomonas fluorescens FW300-N2C3

Annotation: permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 252 PF12697: Abhydrolase_6" amino acids 31 to 220 (190 residues), 38.3 bits, see alignment E=6.2e-13 PF00561: Abhydrolase_1" amino acids 31 to 124 (94 residues), 27.9 bits, see alignment E=4.6e-10 PF00326: Peptidase_S9" amino acids 52 to 240 (189 residues), 43.4 bits, see alignment E=7.4e-15 PF05728: UPF0227" amino acids 83 to 222 (140 residues), 24.9 bits, see alignment E=4.8e-09

Best Hits

KEGG orthology group: K06889, (no description) (inferred from 98% identity to pba:PSEBR_a5059)

Predicted SEED Role

"Prolyl oligopeptidase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WXV3 at UniProt or InterPro

Protein Sequence (252 amino acids)

>AO356_14835 permease (Pseudomonas fluorescens FW300-N2C3)
MTARSETIQIEIDDERMDGTFLSPKSKVPGVLFVHGWGGSQERDLERAKGIAGLGCVCLT
FDLRGHTGGAGIPLSRVTREDNLRDLLAAYDRLLAHPALDTSAIAVVGTSYGGYLASILT
SLRPVRWLALRVPALYRDEQWHTPKRDLDKTDLLDYRSTLVHASTNRALHACSQFTGDVL
LVESETDAYVPHATIMSYRAACQQTHSLTHRIIDGADHALSDPVSQQAYTSILVDWITEM
VVGERLSIIQAR