Protein Info for AO356_14755 in Pseudomonas fluorescens FW300-N2C3

Annotation: 30S ribosomal protein S11

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 129 TIGR03632: ribosomal protein uS11" amino acids 10 to 126 (117 residues), 184.2 bits, see alignment E=4.6e-59 PF00411: Ribosomal_S11" amino acids 19 to 128 (110 residues), 172.2 bits, see alignment E=2e-55

Best Hits

Swiss-Prot: 100% identical to RS11_PSEFS: 30S ribosomal protein S11 (rpsK) from Pseudomonas fluorescens (strain SBW25)

KEGG orthology group: K02948, small subunit ribosomal protein S11 (inferred from 98% identity to pfv:Psefu_0663)

MetaCyc: 79% identical to 30S ribosomal subunit protein S11 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"SSU ribosomal protein S11p (S14e)" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E2RXR4 at UniProt or InterPro

Protein Sequence (129 amino acids)

>AO356_14755 30S ribosomal protein S11 (Pseudomonas fluorescens FW300-N2C3)
MAKPAARPRKKVKKTVVDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSRKSTP
FAAQVAAERAGQAALEYGLKNLDVNVKGPGPGRESAVRALNGCGYKIASITDVTPIPHNG
CRPPKKRRV