Protein Info for AO356_14220 in Pseudomonas fluorescens FW300-N2C3

Annotation: pyrroloquinoline quinone biosynthesis protein PqqF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 810 TIGR02110: coenzyme PQQ biosynthesis protein PqqF" amino acids 11 to 711 (701 residues), 789.6 bits, see alignment E=1.7e-241 PF00675: Peptidase_M16" amino acids 19 to 142 (124 residues), 91.2 bits, see alignment E=6.4e-30 PF05193: Peptidase_M16_C" amino acids 181 to 317 (137 residues), 41.7 bits, see alignment E=1.2e-14

Best Hits

KEGG orthology group: None (inferred from 86% identity to pba:PSEBR_a5165)

Predicted SEED Role

"Coenzyme PQQ synthesis protein F"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WS41 at UniProt or InterPro

Protein Sequence (810 amino acids)

>AO356_14220 pyrroloquinoline quinone biosynthesis protein PqqF (Pseudomonas fluorescens FW300-N2C3)
MPVPDSLRPHTETLANGLRVTLRHVPGLKRSAAVLRVAAGSHDAPLAWPGMAHLLEHLFF
LGTERFPAGEHLMAYVQRHGGQVNARTSERTTDFFFELPPATFADGLERLWDMLAQPRLD
EAEQLREREVLHAEFIAWSQDAAAQRQLALYDGVSASHPLRGFHAGNRDSLAVEHAEFQS
ALHNFYRRFYQSGQMTLSLVGPQSIDALKALAQRFGSHVSAGEAVAGSSPPRLMASPQMR
YQQAREGCLELLFAFEALPAASPQALDFLCTWLNSSKPGGLLAMLRQRGLADSLKATALY
EFAGQGLLHIEFKHGNAQAAAQIQPLLHDWLGFFAAQDDWAPLRQEFTALLQRRQETGSA
LQLARWDCEGRDTPLLANDLVRLREILRQLHPADNVVEPWQLPAPNPFLQTPSEAPRAGL
IRGQTSAHRGLRTFAQDRSRGRRERSPMQFSQALPDNGREGAVYLRWQLTSQAPPDVQSR
LDRHLQDVREEARQAGVDVSFEASAHQWLLKLVGLQAPLPLVLEHVLAKLAQPLPMAQAG
DETPSMPIRQLLKALPDHCRQISTLPMPDSDQDVWTTARWDGLSIGLSAATQGALGPALA
RVPGVVGEDVSLATASRGQRVWHRLQTHGEESAVLLFCPTATSVLADEAAWRWLAQLCQT
PFYQRLRVELQVGYAVFSGLKQVDGQTGVLFGVQSPSLSVAELIAHLEQFLAGLPALIQQ
LDDASLARQQQALAAQLQSSALPFAQAAELLWQGKLAGRPSDYLEQLSAAILCLDRARLE
AAAQGLLDAQGGWYCLSNGACPPEHWQAAR