Protein Info for AO356_13960 in Pseudomonas fluorescens FW300-N2C3

Annotation: conjugal transfer protein TraX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 234 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 34 to 53 (20 residues), see Phobius details amino acids 65 to 83 (19 residues), see Phobius details amino acids 116 to 145 (30 residues), see Phobius details amino acids 152 to 170 (19 residues), see Phobius details amino acids 175 to 175 (1 residues), see Phobius details amino acids 181 to 201 (21 residues), see Phobius details amino acids 214 to 233 (20 residues), see Phobius details PF05857: TraX" amino acids 7 to 230 (224 residues), 156.9 bits, see alignment E=3.6e-50

Best Hits

KEGG orthology group: None (inferred from 91% identity to pba:PSEBR_a5216)

Predicted SEED Role

"Membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9X9H8 at UniProt or InterPro

Protein Sequence (234 amino acids)

>AO356_13960 conjugal transfer protein TraX (Pseudomonas fluorescens FW300-N2C3)
MSRRDGALDLLKWLALLSMVLDHLRYVGFSVDWLYVPGRLAFPWFCLAMAANLARRGASA
APWRYLGWLLLFSAVSEIPYRLFIPDPTTLNVMPTLVLGLLVARCWQTPTLEARCLAVMA
LLLAALFSSQLMFGFFGVLLPLAMLLVFKRPLYMALLPGLVCVAANQWRVLYGAAWLGDG
VALWGLVACLIAPWLGQVLLRHAGRFHPPAMRRWAYGLYPAHFLLLLAVRQVAA