Protein Info for AO356_13500 in Pseudomonas fluorescens FW300-N2C3

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1978 PF01627: Hpt" amino acids 10 to 99 (90 residues), 31.3 bits, see alignment 4e-11 amino acids 629 to 718 (90 residues), 50.7 bits, see alignment 3.5e-17 amino acids 771 to 855 (85 residues), 39.3 bits, see alignment (E = 1.3e-13) amino acids 1074 to 1173 (100 residues), 53 bits, see alignment 6.9e-18 amino acids 1214 to 1314 (101 residues), 59 bits, see alignment 9.3e-20 PF02518: HATPase_c" amino acids 1560 to 1696 (137 residues), 58.2 bits, see alignment 2.1e-19 PF01584: CheW" amino acids 1702 to 1831 (130 residues), 78.9 bits, see alignment 6.1e-26 PF00072: Response_reg" amino acids 1859 to 1970 (112 residues), 97.9 bits, see alignment 8.1e-32

Best Hits

KEGG orthology group: K02487, type IV pili sensor histidine kinase and response regulator K06596, chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) (inferred from 96% identity to pba:PSEBR_a5306)

Predicted SEED Role

"Signal transduction histidine kinase CheA (EC 2.7.3.-)" in subsystem Bacterial Chemotaxis or Flagellar motility or Two-component regulatory systems in Campylobacter (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.3.-

Use Curated BLAST to search for 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WZC3 at UniProt or InterPro

Protein Sequence (1978 amino acids)

>AO356_13500 histidine kinase (Pseudomonas fluorescens FW300-N2C3)
MGDRHDYVALEWVKGEIAETLKQAHLALNRLVDDPQASDALGQCLACIHQVHGGLQMVEF
YGAALLAEEMEQLCAALQDNRVIHRDEAISLLSQALGQLPIYLDRIQGARRDLPLVVLPL
INDLRSARGESLLSETSLFSPELPDIAPLSDEALQRLEPADLPNTLRKWRQTLQMALVGL
LREQDDATHLGYLAKVFQRLETLCAGAPLNALWQVASALVEGMRDGRIANSPALRSLFKE
ADKELKRLLDQGMPGINQPAPPHLLKSLLFYIAKAEHPSGQMQIMKERYSLDDALPDSAM
VDEERARLAGPDRDAMRSVLAALCEELVRVKERLDLFVRSDRQHASELDSLLAPLRQIAD
TLAVLGFGQPRKVIIDQLAVVLSLAQGQREPDDATLMDVAGALLYVEATLAGMVGTVEPE
SREDTHLPTTDLTQIHQIVIKETHTCLQQAKDMIVDYIDADWNSEQLQPLPALLTQVRGA
LAMIPLSRAASLVESCNAFIRDHLLLEQAQPGWEELDHLADVITGLEYYLERLSEDPETP
GEPLLDGVERSLAALGYYPDEARVPVLDDVLSPNEAQVMQDLQELDDPQTVQSLAQVLAS
PVSAVNPPARSTPGSLLPPPLDESPVDDELREVFLEETAEVLDVLREYLPRWSAHPDDHG
ALSELRRAFHTLKGSGRMVRALVLGELAWAVENLLNRVLERSVEPQASARQLIEDTVQLL
PALVAEFAANRQRQRDDVDRLAARAHALAKGGDEDDEDDEQDVAALDPLLLKIFDNEAQG
HLASLNRFLDQAADHLPLQASDELQRALHTLKGSASMAGVLPIAELAGAMDELAREYRAH
LIALDLDEVELLLEAEGLLRRGLRQLHSEPLAPIPDAEDLIQRAQALLAERLHAANSAPD
KALRTKRDPQLINNFLAQGMDILLDAESLLQRWQQHPGEGQELSALLDELTTLGEGAHLA
DLHPVDELCEALLDLYGAVEESSLAVSDEFFRQAQLAHEALIDMLDQLAAGQHVRPQPER
VAALRRLLQESLDPSATGLIRSDGSRTLSIRELGHATAEMERDAPAETSVEDDLASIFLE
EAQDILESAAQALQRWLADPDNGAPLSSLQRDLHTLKGGARMADIRPVSDLAQELENLYE
GLVDRRYSYSEELAQLLGSSHERLDLLLGQLQQGQPLGDPVALIDSIRRFRQDKPNAIET
SAAAQADGAGHDPELLEIFLEEGFDILDSSGAALLRWQEEPSNRQAVETLLRDLHTLKGG
ARMVEIVPIGDLAHELENLYEGLSAGLLQPTPALFALLQSSHDRLAQMLDAVRAGHPCPL
ADRLIAQIQAVNHPQASAVAQAAPAPEPITPPIASPPAAPARQDPSAAGDGADMVKVSAE
LLDDLVNLAGETSIFRGRIEQQVNDAHVALGEMETTIERMRDQLRRLDTETQGRILSRQQ
VEAERLGYEEFDPLEMDRHSQLQQLSRALFESASDLLELKETLDRSNHDAELLLQQQGRI
NTELQEGLMRTRMVPFERMLPRLKRIVRQVAQELGKDVEFVVGNADGEMDRNVLERMAAP
LEHMLRNAVDHGLEPADVRLAAGKPARGRISLDLSREGGDIIFDIRDDGAGVPLEAVRSK
AIKRGLLAPDSDISDRDVLQFILQPGFSTAEKITQISGRGVGMDVVHEEVRQLGGSMTID
STPGQGVHFRIRLPFTVAVNRALMVHCHEDQYAIPLNAIESIVRVLPAELDGHYQLDPPT
YTYAGQRYELCYLGELLKTGARPKLLGQSQPLPVLLVQCNERHVAVQVDAIAGTREIVVK
SLGPQFSAVQGLSGATILGDGRVVLILDLLAPIRALPHQVPRRQVPAEGEGEPQRPLLVL
VVDDSVTVRKVTSRLLERHGMHVLTAKDGVDAMALLSEHAPDLMLLDIEMPRMDGFEVAT
QVRNDPRLAHLPIIMITSRTGQKHRDRAMAIGVNDYLGKPYQESVLLDSIAYWSRTHA