Protein Info for AO356_12705 in Pseudomonas fluorescens FW300-N2C3

Annotation: ammonia channel protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 444 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 39 to 59 (21 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 136 to 158 (23 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details amino acids 201 to 222 (22 residues), see Phobius details amino acids 237 to 255 (19 residues), see Phobius details amino acids 267 to 287 (21 residues), see Phobius details amino acids 298 to 316 (19 residues), see Phobius details amino acids 322 to 342 (21 residues), see Phobius details amino acids 354 to 377 (24 residues), see Phobius details amino acids 392 to 413 (22 residues), see Phobius details TIGR00836: ammonium transporter" amino acids 35 to 442 (408 residues), 476.2 bits, see alignment E=4.2e-147 PF00909: Ammonium_transp" amino acids 37 to 442 (406 residues), 396.7 bits, see alignment E=5e-123

Best Hits

KEGG orthology group: K03320, ammonium transporter, Amt family (inferred from 99% identity to pba:PSEBR_a5491)

Predicted SEED Role

"Ammonium transporter" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W2W0 at UniProt or InterPro

Protein Sequence (444 amino acids)

>AO356_12705 ammonia channel protein (Pseudomonas fluorescens FW300-N2C3)
MTLRKFAGLGALLSFAMPGLAMAEEAAAPVLNSGDTAWMLTATILVLFMTIPGLALFYGG
MVRSKNILSVMMQCFAITGLISILWVIYGYSIAFDTTGMEQGVVNFNSFIGGFGKAFLAG
VTPASLTGPAALFPEAVFITFQMTFAIITPALIVGAFAERMKFSAMLIFMGVWFTLVYAP
IAHMVWSGNGGLMWDWGVLDFAGGTVVHINAGIAGLVACLVLGKRKGFPTTPMAPHNLGY
TLMGAAMLWVGWFGFNAGSAVAANGTAGMAMLVTQIATAAAALGWMFAEWITHGKPSALG
IASGVVAGLVAITPAAGTVGPMGALVIGLAAGVVCFFCATTLKRKLGYDDSLDAFGVHGI
GGILGAILTGVFAAPALGGFGTVTDIGAQVWIQFKGVGFTVVYTAIVTFIILKVLDAVMG
LRVTEEEEAVGLDLAQHNERGYNL