Protein Info for AO356_12365 in Pseudomonas fluorescens FW300-N2C3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 454 TIGR02608: delta-60 repeat domain" amino acids 61 to 83 (23 residues), 16.9 bits, see alignment (E = 2.3e-07) amino acids 178 to 229 (52 residues), 41.2 bits, see alignment 5.9e-15 amino acids 239 to 291 (53 residues), 35.7 bits, see alignment 3e-13 amino acids 358 to 409 (52 residues), 32.1 bits, see alignment 3.9e-12 PF17164: DUF5122" amino acids 101 to 133 (33 residues), 16.8 bits, see alignment (E = 3.4e-07) amino acids 184 to 219 (36 residues), 28 bits, see alignment 1.1e-10 amino acids 245 to 282 (38 residues), 23.5 bits, see alignment 2.6e-09 amino acids 363 to 400 (38 residues), 25.4 bits, see alignment 6.9e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WV58 at UniProt or InterPro

Protein Sequence (454 amino acids)

>AO356_12365 hypothetical protein (Pseudomonas fluorescens FW300-N2C3)
MAQAPSAVQAGTLDPTFAEEGVLTLPTPDLTGYRTLAILPLAENKLLITVLLPGDPAPIR
LAKVNEDGSLDMAFGGAGTGLVEFSIKNTDLEVYQLSGLDDGGWLVIGQFSSFEQSGAYV
VRFLEDGRLNTLFGEDGVRLLPYRSEPRAEDREDGPATFSRRDREPSAGDARSSGNQGVS
AVVQSDGKIVLPSWVEFGTSPGQWAVLRLNPDGSTDDTFNGSGFVVIELPGIPRTPTSIR
SVVLQADGQVLVCGEYSSQDTPDSNGIYVIRLDVTGRLDTSFNGGVGVVTVANPTFMNAN
AMALRERDDAIVVVGDVWRDQYRHGLMFVLSRDGFFDFAFNSGQPLFSKWVDQGHDWYRC
AWQADGSILVGGSTGRGVVEEGVSALTARFRSDGSPDLTFNDVGFVLFDEEGQYETVEDM
ALMPDGRIVVGGFARLPGPVWSRIVGSWIIRYLA