Protein Info for AO356_12230 in Pseudomonas fluorescens FW300-N2C3

Annotation: type IV secretion protein Rhs

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1479 transmembrane" amino acids 23 to 46 (24 residues), see Phobius details amino acids 52 to 74 (23 residues), see Phobius details amino acids 263 to 286 (24 residues), see Phobius details PF05488: PAAR_motif" amino acids 173 to 217 (45 residues), 37 bits, see alignment (E = 8.1e-13) PF20148: DUF6531" amino acids 295 to 374 (80 residues), 76.3 bits, see alignment 4.9e-25 TIGR01643: YD repeat (two copies)" amino acids 579 to 615 (37 residues), 26.5 bits, see alignment (E = 6.5e-10) amino acids 600 to 640 (41 residues), 32.2 bits, see alignment (E = 1.1e-11) amino acids 649 to 683 (35 residues), 37.4 bits, see alignment (E = 2.4e-13) amino acids 685 to 723 (39 residues), 21.8 bits, see alignment (E = 2e-08) amino acids 730 to 767 (38 residues), 31.5 bits, see alignment (E = 1.8e-11) amino acids 770 to 808 (39 residues), 24.4 bits, see alignment (E = 3.1e-09) amino acids 811 to 851 (41 residues), 37.6 bits, see alignment (E = 2.1e-13) amino acids 888 to 919 (32 residues), 20 bits, see alignment (E = 7.7e-08) amino acids 1141 to 1179 (39 residues), 26.9 bits, see alignment (E = 4.9e-10) PF05593: RHS_repeat" amino acids 600 to 636 (37 residues), 25.5 bits, see alignment (E = 3.5e-09) amino acids 650 to 678 (29 residues), 30.8 bits, see alignment (E = 7.7e-11) amino acids 664 to 700 (37 residues), 39.4 bits, see alignment (E = 1.5e-13) amino acids 730 to 764 (35 residues), 32 bits, see alignment (E = 3.3e-11) amino acids 770 to 805 (36 residues), 24 bits, see alignment (E = 1e-08) amino acids 793 to 826 (34 residues), 24.4 bits, see alignment (E = 8e-09) amino acids 811 to 847 (37 residues), 30.3 bits, see alignment (E = 1.1e-10) PF03527: RHS" amino acids 1227 to 1263 (37 residues), 51.4 bits, see alignment (E = 1.9e-17) TIGR03696: RHS repeat-associated core domain" amino acids 1254 to 1333 (80 residues), 96.9 bits, see alignment 7.6e-32 PF08808: RES" amino acids 1358 to 1476 (119 residues), 49 bits, see alignment E=1.8e-16

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a5569)

Predicted SEED Role

"Rhs-family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WYT0 at UniProt or InterPro

Protein Sequence (1479 amino acids)

>AO356_12230 type IV secretion protein Rhs (Pseudomonas fluorescens FW300-N2C3)
MSDALWAARLGDALNHTSMMADILGGVLEVAANIAITAVATAAVVAATGITVATGGLGCF
LLGAVVGAVVGLAMSKTGADKGLSDLCEGIGNALFPPTVQANILTGSTNTLTNNIPAARA
AGAIESHVAPAGTELEAPEAEPSYLDMAENFFSQMWRPTVAVPAPGAVPKPLDMITCMKH
PPMPPQFLAEGSDKVTINGQPAVRSGDRSTCDATVVSAGLISPDVTIGGGSVVVREIRSG
KTPGVGLAVTALLMLKGGKGKFLSNLPCMLIGGAASMAVSSAMGAAANAAMGSSNPVHAA
TGAKVLGDVEEMDFVLPGILPIDWQRFYNSRDERRDGLFGAGWSVPYEVRVEILPHPDGG
ETLVYSDEQGRRIDMGSIPLGGAVFSAGEGLSVRRHANGELLIESADGLYRLFEPTPANA
ALLRLNQLGDRNDNRIHLEYDDNGRLAQLRDTFDLTRIALAYDERWPQRVSRIDRLYADQ
RREVLMHYGYDGQGDLAQVRQSNDQVKRRYAYDAGRRMVEHQLPTGLRCFYEWALVENLE
WRVVRHWTDAGDAYTFDYDLAAGTTRITDGLQRISTRRWDTRYQITENTDALGRTWTFQW
NDESQLLGATDPNGGQHQFSYDEAGNLCETRDPLGRSESTLWLEHWALPLAETDAAGNTW
QYRYDARGNRIRETDPLGHVTRYRHDAHGQVVEVIDATGKSKRMRWTALGQLSEHTDCSG
YTTRLSYCERGLLLSSTDALGERTLFSYDDQGRLLSKQLPDGRTEHYQRDASGQLISYSD
PAGHTTTFQHTLSGQLRVRTDAHGRRVELSYDNYGRLLALTNENGERYRFAWDAADRLTA
QHSLDGSLKRYAYDPLDNVTRVEALAVPGSTDLDLAPQAPIIHELERDAMGRLVAKVTAD
GRTEYRYDALDQVNAITFTSQTGEVQSLGLHYDALGQLITEQGWAGNLEHRYDELGNLNQ
TLLPDGRWLNRLHYGSGHLHQINLDGQVISDFERDRLHREVLRTQGRQSTRSEYDRSGRL
RARQRRQQGQSTLLQPVAQSLFGYDASDQRVERFDSQPEASHRQLLHYDATGRILASQDN
LQGQRESFAYDPAANLLDGLGTGQVAHNRLLTYQDKRYRYDGFGRMVEKRSARRGVQRFR
YDDEQRLVEVRNDNGSVVKMTYDPLGRRIEKAEYDRNATLLSRTRFTWDALQLLQEHRDS
QTSLYIYADDSHDPLARVDGLGDQQKVRYYHNDFNGLPEQLSEADGHTLWRARYQVWGNT
AEELREPYYIEEQNLRFQGQYLDRETGLHYNTLRFYDPDIGRFTTPDPIGLAGGLNLYQY
APNPVSWIDPFGLMKCSTPPKGRKVNRTVYRFEEPGRISTTWTAHKWNVASRHRYTAPGL
GGVYGANSRKTAMGEVNHWGVDLSTRVLVSKKVQLNNVLDLTRADVRKQLGVSLKSITGD
KYTQTHQIGAWAKANGYDGILAPSARNPTGSNLISFAGF