Protein Info for AO356_11815 in Pseudomonas fluorescens FW300-N2C3

Annotation: glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 455 transmembrane" amino acids 65 to 83 (19 residues), see Phobius details amino acids 103 to 123 (21 residues), see Phobius details PF20706: GT4-conflict" amino acids 204 to 375 (172 residues), 30.7 bits, see alignment E=2.5e-11 PF00534: Glycos_transf_1" amino acids 267 to 418 (152 residues), 84 bits, see alignment E=1.4e-27 PF13692: Glyco_trans_1_4" amino acids 269 to 407 (139 residues), 67 bits, see alignment E=3.4e-22

Best Hits

KEGG orthology group: None (inferred from 86% identity to pba:PSEBR_a5632)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H214 at UniProt or InterPro

Protein Sequence (455 amino acids)

>AO356_11815 glycosyl transferase (Pseudomonas fluorescens FW300-N2C3)
MSRLLVDCTYVYDHPNDNSGIQRVVRNVIRELPAKDQERECIPVVMLQGKLYEVKSLAPL
PTNGWDLAGLRARLVQFANLFWLRQRTLERRRPFSQSVWARRFLYVACRLFALGCLSLPI
RILDRLLKRKPAPARSVPLAHRAGDQLVLLDSSWHSGFFPLAEQLKRDGVGIISVIYDLI
PLTHPQFCDAGLVKVFNHWFDWIARTADGYIAISTTIRDQLRQEMVRRIGEQQVRERWFD
YFHLGSELDLIDATHAVDPNLLRLFKRPEPVFLMVSTIEPRKNHAYLIDAFERAWAAGSQ
ARLCIVGKIGWKCEALIERIQRHPQLDSRLFMFNNLADQSLEHAYRHSTALVFPSYVEGF
GLPLVEAMQRGLPAMGSDIPVFREIGGDFMVYFDLDDPQSLANLVIDMEHTGVFPARRNL
EQWQWLSWRQASAQLVERIERHVDEVIVDRETACG