Protein Info for AO356_11255 in Pseudomonas fluorescens FW300-N2C3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 39 to 57 (19 residues), see Phobius details amino acids 64 to 87 (24 residues), see Phobius details amino acids 94 to 114 (21 residues), see Phobius details amino acids 121 to 138 (18 residues), see Phobius details amino acids 144 to 166 (23 residues), see Phobius details amino acids 177 to 196 (20 residues), see Phobius details amino acids 208 to 232 (25 residues), see Phobius details amino acids 244 to 263 (20 residues), see Phobius details amino acids 269 to 287 (19 residues), see Phobius details PF00892: EamA" amino acids 13 to 137 (125 residues), 47.5 bits, see alignment E=1e-16 amino acids 147 to 286 (140 residues), 59.3 bits, see alignment E=2.3e-20

Best Hits

KEGG orthology group: K03298, drug/metabolite transporter, DME family (inferred from 39% identity to vei:Veis_0925)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WXV1 at UniProt or InterPro

Protein Sequence (302 amino acids)

>AO356_11255 hypothetical protein (Pseudomonas fluorescens FW300-N2C3)
MNSSKRIAPHDYAFLLLVALIWGGNFALIKVGLEQIKPFVMTFIRFSLCVFPFVFFMPRP
KIPAYVLAAYGILFGGGIWGCANIAIYTGTSPGTVSLIIQLSAFITFIIGLIAFKERASN
ISIIALAISLSGLFLMLIKNNQGSGPLGVAICLLAAFCFSLCTFIIQKYKPKDLLPFMIW
SLLFSLPILFILALYFEGADAFYSLRDAINYKVIVSLVSQSYVTTLLGYWIWNYNIRKYS
GSTVAPIGLLVPFFAIIISYLFFSYPINGTVILSIGLVFCGVILFNLRHSIEQLFNKTAI
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