Protein Info for AO356_10940 in Pseudomonas fluorescens FW300-N2C3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 333 PF00296: Bac_luciferase" amino acids 8 to 302 (295 residues), 157 bits, see alignment E=4e-50 TIGR03558: luciferase family oxidoreductase, group 1" amino acids 9 to 329 (321 residues), 443.4 bits, see alignment E=2.5e-137

Best Hits

Swiss-Prot: 57% identical to YVBT_BACSU: Uncharacterized protein YvbT (yvbT) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a140)

Predicted SEED Role

"Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W7J3 at UniProt or InterPro

Protein Sequence (333 amino acids)

>AO356_10940 hypothetical protein (Pseudomonas fluorescens FW300-N2C3)
MKQLSDVKFSTLDLVPVRADGNAAQSLRNSLDLAQHVEKYGYTRFWVAEHHNMDGIASSA
TAVLLGYLAGGTSTIRVGSGGVMLPNHAPLIIAEQFGTLESLYPGRIDLGLGRAPGSDQM
TARALRRERSGSADDFPEDVAELMRYLGPRTPDQRIIAMPGTGTNVPVWLLGSSLFSAQL
AGERGLPYAFASHFAPRFMHEAIRIYRNHFKPSAVLDKPYVMLGVPLVAADTDEQADYLA
TSVYQRILALMRGQSLVQRPPVETMNGLWLPHEKEAVGDFLGLAMVGSPQKIRAKLQVLI
EQTQADELIFTSDLYEHADRLHSYELLAQVMKG