Protein Info for AO356_10605 in Pseudomonas fluorescens FW300-N2C3

Annotation: peptide transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1188 transmembrane" amino acids 286 to 305 (20 residues), see Phobius details amino acids 417 to 437 (21 residues), see Phobius details TIGR01733: amino acid adenylation domain" amino acids 272 to 643 (372 residues), 364 bits, see alignment E=9.3e-113 PF00501: AMP-binding" amino acids 275 to 569 (295 residues), 214.8 bits, see alignment E=4.5e-67 PF13193: AMP-binding_C" amino acids 627 to 700 (74 residues), 26.4 bits, see alignment 2.7e-09 PF00550: PP-binding" amino acids 729 to 794 (66 residues), 55.3 bits, see alignment 1.6e-18 TIGR01746: thioester reductase domain" amino acids 832 to 1188 (357 residues), 337.3 bits, see alignment E=1.3e-104 PF01370: Epimerase" amino acids 833 to 1022 (190 residues), 34.7 bits, see alignment E=3.1e-12 PF07993: NAD_binding_4" amino acids 835 to 1071 (237 residues), 177.3 bits, see alignment E=8.1e-56

Best Hits

KEGG orthology group: None (inferred from 93% identity to pba:PSEBR_a198)

Predicted SEED Role

"Non-ribosomal peptide synthetase modules and related proteins"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WGV2 at UniProt or InterPro

Protein Sequence (1188 amino acids)

>AO356_10605 peptide transporter (Pseudomonas fluorescens FW300-N2C3)
MRRLDIAVPGISQAMAELARELELHGHAVVRHSPAGHDAVDLLIDDGTTPQAIEARSCLQ
IRVALCTLPGETLPQPVLVFRDGAQRLLCQEVIAPQRDGNGQSLRLRTLATLVETGARLV
SQLSRDETCFDHWPTVHADPIDPPLLGLDALEPLAFEHGLNRPAVPWLLAAADVPVMHSI
EQRLLDDATQPALWVDEQFIDYKSLRRLALGMQQPMLETLQSAGPVGAGRAEPVGAESTE
PVGARLARDEDTEVLNQTASAFIGGKPSSHRSSSHKVIGVCLPKSAHLYAAILAVLGCGA
VYLPLDPQHPAQRRRFILENAQADLLLHDGNSDLGDLSLPTLNVHQLPALKPGIPASLIR
RVVNIDEPAVAIYTSGTTGQPKGVLLSHRNLSHFCAWYGDYVGLQRDSRALQFSTINFDA
SLLDILPTFIHGALLVVPSEDQRRDPQQLVALIHQQHVSHAFLPPALLSVMPLDAPLGLT
HLITGGDVCEPFVIEQLAPQCRFHNIYGPTETTVLATTRQFGVGDNNRNLGVPIANGRVL
ILDEQLQPVPQGVPGELYIAGPGVGLGYLNDPTLTATRYLDLTLPTGQALRVYRTGDIGQ
WTDNGIELCGRRDNQVKIRGFRVEPEEIEHCLRDSQLFRQVAVGVDEKRRILAFLVHSEQ
TPPGAALQALREHVQNSLPSYMHPAAYVELPSLPYTSNGKVDRRALLAMAVQVHVDGQRR
QPQNALETQLQQLWAELLELPVDDIATDESFFNLGGHSILLSRLLLSIRQVFGRSLSINR
FIEAPTLMTLAKLLDDPEHSSASTLSPQAFIDAEAELNLDPLPISQCGDVHKVVVTGANS
FLGVHIVEALLAWGATEVACLVRASAEHSAAERFSQALRDNHLTHLDLDRVSVYAADITQ
PQLGLPDDVYARIDSTFGALVHNAAHVNHVLDYASLARDNVEPIFECLRLCEGRSKKIFN
FVSTLSASSALDADGQVLEQPAAETPPIYIKNGYNLSKWVGERILQRARDRGVWVNLFRP
GNISFNSLTGVCQPHKNRLMLMLKGSIQLGQVPDLSLNFDLMPVDFLARFIAFHASRYQP
TQAVFNLHNPQPLSWDAYVASFRDSGREFSLVSVAEWQRQLARVDADNALFGVLGFYLNG
FEEDIGDISLISHDNARAGVRQMGASYPEKSPALLRRGADYLKAIDFI