Protein Info for AO356_10470 in Pseudomonas fluorescens FW300-N2C3

Annotation: glycosyl hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2411 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF14252: DUF4347" amino acids 84 to 242 (159 residues), 177.9 bits, see alignment 2.2e-56 PF19078: Big_12" amino acids 596 to 697 (102 residues), 111.1 bits, see alignment (E = 4e-36) amino acids 699 to 800 (102 residues), 126.1 bits, see alignment (E = 8.9e-41) amino acids 801 to 902 (102 residues), 118.1 bits, see alignment (E = 2.7e-38) amino acids 903 to 1004 (102 residues), 129.1 bits, see alignment (E = 1e-41) amino acids 1005 to 1106 (102 residues), 127.8 bits, see alignment (E = 2.7e-41) amino acids 1107 to 1207 (101 residues), 117.1 bits, see alignment (E = 5.6e-38) amino acids 1208 to 1309 (102 residues), 132.8 bits, see alignment (E = 7.1e-43) amino acids 1310 to 1411 (102 residues), 120.4 bits, see alignment (E = 5.4e-39) amino acids 1412 to 1512 (101 residues), 113.5 bits, see alignment (E = 7.7e-37) amino acids 1513 to 1614 (102 residues), 130.4 bits, see alignment (E = 4.2e-42) amino acids 1615 to 1716 (102 residues), 132.3 bits, see alignment (E = 1.1e-42) amino acids 1717 to 1818 (102 residues), 134.4 bits, see alignment (E = 2.3e-43) amino acids 1819 to 1920 (102 residues), 131.6 bits, see alignment (E = 1.8e-42) amino acids 1922 to 2022 (101 residues), 126.4 bits, see alignment (E = 7.2e-41) amino acids 2023 to 2123 (101 residues), 116.3 bits, see alignment (E = 9.7e-38) amino acids 2125 to 2226 (102 residues), 110.7 bits, see alignment (E = 5.6e-36)

Best Hits

KEGG orthology group: None (inferred from 90% identity to pba:PSEBR_a225)

Predicted SEED Role

"Fibronectin type III domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W1U5 at UniProt or InterPro

Protein Sequence (2411 amino acids)

>AO356_10470 glycosyl hydrolase (Pseudomonas fluorescens FW300-N2C3)
MWWSKGKSRVTEGAQALASPMIMSLEPRMLFDGAVAATVADAAQADAQPNAEAAKTPTAD
QPADTHAPQGQVDATQAAVPGKSVVFVDSRVKDSANLLEGVAPGTQVVQLDATKDGLQQI
ADYLDTHQGISSVQIIAHGNAGDLWLGNSYLSADNVQARSEVLAQIGQDMNAGGDILIYG
CYTAEGERGLSLVDSLAQLTGRDVAASNDRTGLGGDWDLEIATGNIESANVLSASAMSEY
QWGLATWTATNNANSGVGSLRAALASAQNGDIVTFNSSMTVALTQVLVVNKNVTIDGDLN
NDNVADVTLDGQFRTQVINVTAGTTATLDGLVITRGVVSGNGGNGGDDALVAKGGGINNA
GTLTLRNVTVTANVAAGGGGGGGVTPEYAGGGGGGGGALGGGIGGRGGDTLNSSGSNGSA
NQGGAGGGFFNIGGRGGSATGGTGGAVYAGYSTGSSGGTASSGGLSIGGGGGGDGYNDIG
GAGGGAVGGIYNDTGATLRIIGNSVISNNIGAGGGGGGGGAGGGYTQAGGAGGVGVGAIW
NKGSILITAANFAALAGNVGGSGTGGTSAGTAGVSPSSVANVYGDGGTINTNYTPDETPP
TATVVVANTNLNSGGTSQVTITFSEAVTGLTAADLTVQNGTVGTLTSGDGGITWTGTLTA
ASNIADTTNIITLNNTGVADLAGNAGVGTTDSNNYVVNDTVAPTASIVVSDTALRSGETS
LVTITFSEAVSGLTTADLTVANGTLSGLSSSDGGITWTATLTPDAAVTDTTNLVVLNNTG
VADLSGNAGVGTTNSNNYAIDTLRPTATIVVADTALSAGETSLVTITFNEAVSGFTVADL
TVANGIVTGLSTSDGGITWTATLTPDAAITDTTNLVVLNNSGVADLSGNVGTGTTDSNNY
AIDTLRPTATIVVADNALNIGETSLVTITFSEAVTGFTLADLTVANGSLSGLSSSDGGIT
WTATLTPSASTTDATNLIVLANTGVLDAAGNAGTGTTSSNNYAVDTARPTATIVVADNAL
RIGETSLVTITFNEAVTGLTTADLTVANGTLTGLSTSDGGITWTATLTPSASTSDATNLI
TLDNTGVADAAGNAGSGTTDSNNYAIDTARPTATIVVADTAVALGETSVVTITFNEAVTG
FTLADLTVANGSLSGLSTSDNITYTATFTPSVGTSDATNLITLNNTGVVDGAGNAGTGTT
DSNNYVVDTLRPTATIVVADNALSVGETSLVTITFSEAVSGFDNSDLIVANGTLSAVSSS
DGGITWTATFTPALGVSDTSNVITLNNTGVSDAAGNTGTGTTNSNNYQVDTNVPTATIVI
ADTSLSIGETSVVTVTFNSAVSGFDNADLTVSNGTLSTMISTDGGVTWTATFTPSASISD
TSNVITLDNTGLINGAGNAGVGTTDSNNYAVDTVRPTATIVVADPTVAIGETSLVTITFS
EAVTSFTLADLTVSNGSLSGLSTSDNITFTATFTPSAGVSDSSNLISLNSGSIADVAGNI
NTGTADSNNYVVDTLRPTATIVMSDSNLSVGETSLVTITFSEAVSGFDNSDLSVANGTLS
AVSSSDGGITWTAIFTPATGTRDATNLIVLNNSGVSDAAGNAGTGTSNSANYTVDTQVPT
ATIVVADTSLSIGETSQVTITFNEAVSGFDNSDLTVSNGTLSNVSSSDGGVTWTATFTPS
ASIADTSNLITLDNTGVVNVSGNAGVGTTDSNNYAIDTVRPTATIVVADTAIAAGETSLV
TITFSEAVTGFTTADLTVANGTLSGLSSNDGGITWTATFTPAAGITDSSNLITLANGGVA
DLAGNVGSGTTDSNNYSVDSQRPTATIVLSDSVLKPGETAQVTITFSEAVTGFSNADLSV
ANGTLSAVSSSDGGLTWTATFTPTLGVTDATNLISLDNTGVSDAAGNTGTGTTDSANYAV
ETQVPTATIVVADSALQIGETSQVTITFSEAVSGFDNTDLSVSNGTLSNVSSSDGGVTWT
ATFTPSGSITDTSNLITLDTSGVVNASGNSGVGVVSSNNYAIDTARPGATISLGDTTLGI
GQSTTVTITFTEAVSGFDLSDLSVANGVLSNLASSDGGLTWTATLTPTAGVSDATNLILL
DTGNVQDLAGNVGAGIAISSNYALDASRPTATIVVADPNLTVGETTQVTITFSEAVSNFD
LSDLSVTNGELTNLTSSDGGRTWTATFTPTVNLTDPSNFIALDTSNVNDLSGNTGASVAV
SNNYAINTVVPNDVKPPPEFLTSDPVTVTPPSEVPLQPIVFTPPTGNLGSPLGFPPLFEQ
RDVGGGLKPIGDIFINRGQLAPSYIAQVFSNDASGDGSGQGFLGFGGGDGGVFGSSTLST
LFTQDSASEGDSMDAFGSQSMQGGDVSQGLRGMFGAPTLGQQLQQLKDTEQGQVDSLATA
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