Protein Info for AO356_09250 in Pseudomonas fluorescens FW300-N2C3

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 282 transmembrane" amino acids 42 to 63 (22 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 95 to 119 (25 residues), see Phobius details amino acids 139 to 167 (29 residues), see Phobius details amino acids 210 to 236 (27 residues), see Phobius details amino acids 250 to 270 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 109 to 270 (162 residues), 77.8 bits, see alignment E=4.6e-26

Best Hits

Swiss-Prot: 37% identical to OPUAB_BACSU: Glycine betaine transport system permease protein OpuAB (opuAB) from Bacillus subtilis (strain 168)

KEGG orthology group: K02001, glycine betaine/proline transport system permease protein (inferred from 83% identity to pba:PSEBR_a3617)

Predicted SEED Role

"L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1)" in subsystem Choline and Betaine Uptake and Betaine Biosynthesis (TC 3.A.1.12.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W6T9 at UniProt or InterPro

Protein Sequence (282 amino acids)

>AO356_09250 ABC transporter permease (Pseudomonas fluorescens FW300-N2C3)
MSTPDFSSQFDSAIDSSLEWLADHGEFLFSAANDALTAVYKGVLWCIALPPFYVIALLFA
LIGWRLIGLRFAILSGLALMFCAFIGLWPETVSTLALVLTATFLALLVAIPLGVVAGLAP
AFDQVVDPCLDLVQTMPPYIYLLPAIALLGYGPATALLATFIVALPPALRLTSLGIRMTP
KEFIELGDASGVTGMQMFFKIRLPFAMPSIMAGVNQSLMMAFGMVVIAGIVGSGGLGESI
YGAVRTLDIAKSINAAIAIVILTMILDRLAQSAARPRMGESQ