Protein Info for AO356_08575 in Pseudomonas fluorescens FW300-N2C3

Annotation: YgiQ family radical SAM protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 766 TIGR03904: uncharacterized radical SAM protein YgiQ" amino acids 23 to 643 (621 residues), 868.3 bits, see alignment E=1.2e-265 PF08497: Radical_SAM_N" amino acids 23 to 378 (356 residues), 456.6 bits, see alignment E=5.8e-141 PF04055: Radical_SAM" amino acids 379 to 584 (206 residues), 48.8 bits, see alignment E=1.4e-16 PF11842: DUF3362" amino acids 593 to 736 (144 residues), 164.8 bits, see alignment E=2.5e-52

Best Hits

Swiss-Prot: 95% identical to Y4928_PSESM: UPF0313 protein PSPTO_4928 (PSPTO_4928) from Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)

KEGG orthology group: None (inferred from 100% identity to pba:PSEBR_a555)

Predicted SEED Role

"Fe-S OXIDOREDUCTASE (1.8.-.-)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WTN7 at UniProt or InterPro

Protein Sequence (766 amino acids)

>AO356_08575 YgiQ family radical SAM protein (Pseudomonas fluorescens FW300-N2C3)
MQAAKPLFDYPKYWAECFGPAPFLPMSREEMDQLGWDSCDIIIVTGDAYVDHPSFGMAII
GRLLEAQGFRVGIIAQPNWQSKDDFMKLGEPNLFFGVAAGNMDSMINRYTADKKIRSDDA
YTPGGLAGKRPDRASLVYSQRCKEAYKNVPIVLGGIEASLRRIAHYDYWQDRVRNSILID
ACADILLYGNAERAIVEVAQRLSYGHKIEDITDVRGTAFIRRDTPQGWYEVDSTRIDRPG
KIDKIINPYVNTQDTQACAIEQEKGPVEDPSEAKVVQILASPKMTRDKTVIRLPSVEKVR
GDAVLYAHANRVLHLETNPGNARALVQKHGEVDVWFNPPPIPMTTEEMDYVFGMPYARVP
HPAYGKEKIPAYEMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSEESIIREIEEIRDK
VPGFTGVISDLGGPTANMYRIACKSPEIESACRKPSCVFPGICPNLNTDHSSLIQLYRSA
RALPGVKKILIASGLRYDLAVESPEYVKELVTHHVGGYLKIAPEHTEEGPLNQMMKPGIG
SYDKFKRMFEKYTKEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLKGNGFRADQVQAFYP
SPMATATAMYHSGKNPLRKVTYKSDAVTIVKSEEQRRLHKAFLRYHDPKGWPMLREALTR
MGRADLIGPGKNQLIPLHQPATDSYQSARRKNSTPAGSHKVAKETTKILTQHTGLPPRAS
DGGNPWDKREQAKAAAFARNQQAAKERKDAAKGKGPKPARKPVVPR