Protein Info for AO356_07840 in Pseudomonas fluorescens FW300-N2C3
Annotation: hypothetical protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Cysteine desulfurase (EC 2.8.1.7)" in subsystem Alanine biosynthesis (EC 2.8.1.7)
MetaCyc Pathways
- superpathway of L-alanine biosynthesis (4/4 steps found)
- L-alanine biosynthesis III (1/1 steps found)
- L-cysteine degradation IV (1/1 steps found)
- superpathway of thiamine diphosphate biosynthesis II (8/11 steps found)
- superpathway of thiamine diphosphate biosynthesis I (7/10 steps found)
- molybdopterin biosynthesis (4/6 steps found)
- cytidylyl molybdenum cofactor sulfurylation (1/2 steps found)
- thiazole component of thiamine diphosphate biosynthesis II (4/7 steps found)
- bis(guanylyl molybdopterin) cofactor sulfurylation (1/3 steps found)
- thiazole component of thiamine diphosphate biosynthesis I (3/6 steps found)
- tRNA-uridine 2-thiolation (mammalian mitochondria) (1/4 steps found)
- tRNA-uridine 2-thiolation (yeast mitochondria) (1/4 steps found)
- tRNA-uridine 2-thiolation (thermophilic bacteria) (1/5 steps found)
- [2Fe-2S] iron-sulfur cluster biosynthesis (4/10 steps found)
- tRNA-uridine 2-thiolation and selenation (bacteria) (4/11 steps found)
- tRNA-uridine 2-thiolation (cytoplasmic) (1/8 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 2.8.1.7
Use Curated BLAST to search for 2.8.1.7
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A0N7H1S0 at UniProt or InterPro
Protein Sequence (371 amino acids)
>AO356_07840 hypothetical protein (Pseudomonas fluorescens FW300-N2C3) MIHFNTAGSGLMSAETLKLMQRYLQDEFESGAYETELNYASVLDVEVYENIARLLGTDAR NVALFDGATKAWVTALEALTWSEGARVLVTPYEYAGNLIALATLQRLHGVVVEVMPLLAD GNLDLQWLARHMSAEVKLVSIVHVPSCCGIVNDIEAVGDILRDYSAWYFVDACQSAGMLA LDVGAAGCDVLTAAGRKFLCGPRGTGFAYLSERFLATAQPRFTDLGRATVDVSGVVTRGV GDARCFEYAERNNAAVVGLNQAIKERLSSAYGAESELYRVLFRRLAETPGVNLIAPGTHH QGIIAFTHERRSATELVSYLRARGINAWPGYASHTPYFMLAQGHERFVRVSINGRNNAQD VDEFIAVLTEL